Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2003 ATGGCTTCTCTGGTTAGAAAGCAAGCTAAGAATGGCTGCTTTCTCCTCCTCCTCCTCTTCCTATCTCTTCCATATGTCTCAATGGCCGTCTCAGAAGCGGAAGCTTTGTATCTGAGGGGTCGCCAACTTTTGGCTCTGAAAGAACATGAAGAACTCCCAGATGACTATAAATATGAACTTGACATTGCTGACACATTTCCAAATGAGAGGTTGAAGAAGGCTTATATTGGGCTTCAAGCTTGGAAATTGGCCCTTTATTCTGACCCTCATAACATGACAGCCAATTGGGTTGGTGCGGATGTGTGCTCTTACACAGGCGTTTTTTGTACTGCCGCGCTTGATGACTCCAATGTGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCTGGCTACTTGCCTCCAGAGCTTGGCCTCTTGACCGATTTGGCTTTGTTCCATATCAATTCTAATAGGTTTTGTGGTATCATTCCTTCTAGCTTCTCTAAGCTCACTCTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTCCCTGAGGTTGTCCTTAAATGGCCCATCGCTAAGTTCCTCGATCTTAGGTACAACGACTTCGAAGGAGAACTTCCGCCTTCACTCTTCACCAAAACCTTCGACGCCATATTCTTAAACAACAACAGATTCAACTCTCTCATCCCCGACACCATCGGACACTCCACCGTCTCCCTTGTGTCCTTCGCCAACAACGAGTTCCATGGCTGCATTCCCAGCACCATCGGCCAAATGGCCAGCCTCAACCAGATCCTCTTCCTCGGTAACAAGCTTGGCGGCTGTCTCCCACCGGAGATCGGAAACCTCGTCAATCTCACCGTCTTCGATGTCAGCTCCAATACCTTCGTCGGCAACTTGCCCACATCCTTCTCCTCCCTCAACAACTTGGAGATTCTCGACGTTAGTAGCAATGAATTCAGGGGTTCTGTTTCTGGAGGGCTATGCAAAATGCCTAAATTGGAAAACTTTACTTTCTCCTTTAATTTTTTTGATCGGGAAGATTCTGAGTGTGTTGCATCTAAAGGATCCGACAAGATTTTTGATGATGCTCAGAATTGTTTGGCGAATCGCCCCGAGCAGAGAGATTCTGACAAATGTAGCTCTGTTCTTAAGAAATCCGTGGATTGTGGAAGCTGCGGTGGCGGTTTTCCCGGCGCGCCCATGACTCCTGATGATCCATATGATCAATCTCCGGACCCGAGACATAGGTCACCACCACCTCCGATCACCTATCCACCGGAAACTGTTGACGCCTCTGTCCCACCATCGCCGTTTGAGTCCTCACCGCCTACATCTCACTCTCCACCGTCGCCGACTCAATCCTACCCACCATCCTCTGTTCCATCCTCTCCACCGTCCTCAGTTCCTTCGTCCCCACAATCCTCCGTTCCGTCTTCACCACCGTCCTCCGTTCCGTCCTCACCGCCGTCCTCCGTTCCGTCCTCACCCCCTACCGTCCAATCCCCGCCAACCCCGGTTCAGTCTCCCCCACCACCGGTTCAGTCTCCCCCACCACCGGTTCAGTCTCCACCTCCACCCGTTCACTCTCCACCTCCACCGGTTTACTCCCCTCCACCACCGGTTCACTCCCCACCTCCACCCGTGTACTCTCCTCCACCACCAGTGCACTCCCCTCCACCACCGGTCTACTCCCCACCTCCACCGGTCCACTCTCCTCCACCTCCAGTACACTCCCCGCCCCCTCCGGTCCACTCTCCTCCACCACCGGTGCAGTCCCCACCACCTCCAGTGCACTCCCCACCTCCACCGGTTCATTCCCCACCACCCCCTGTCCATTCTCCACCACCACCGGTTTATTCCCCACCACCTCCCGTCTACTCCCCTCCCCCACCGGTCTACTCCCCACCACCACCGGTTCATTCCCCACCCCCACCGGTTTACTCACCACCACCCCCCGTCCACTCTCCGCCACCCCCCGTCTACTCTCCACCACCACCGGTCTTTTCCCCACCCCCACCGGTCCACTCTCCACCGCCACCAGTCCAATCCCCACCACCCCCGTCTACTCTCCACCACCACCCCCTGTTTACTCCCCACCACCACCAGTCCAATCTCCACCACCTCCGACTGCATTTCCTCCTCCTCCTCCCGGTGCTTCTCCACCGCCGGCCTTCGAAGACATCATCCTCCCACCAAATATCGGTTTCCAATACGCATCGCCGCCTCCACCACAGTTCCCCGGCTACTAACTATGTATTTCACACACATTAG 2277 54.28 MASLVRKQAKNGCFLLLLLFLSLPYVSMAVSEAEALYLRGRQLLALKEHEELPDDYKYELDIADTFPNERLKKAYIGLQAWKLALYSDPHNMTANWVGADVCSYTGVFCTAALDDSNVEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLTLMFEFDVSNNRFVGHFPEVVLKWPIAKFLDLRYNDFEGELPPSLFTKTFDAIFLNNNRFNSLIPDTIGHSTVSLVSFANNEFHGCIPSTIGQMASLNQILFLGNKLGGCLPPEIGNLVNLTVFDVSSNTFVGNLPTSFSSLNNLEILDVSSNEFRGSVSGGLCKMPKLENFTFSFNFFDREDSECVASKGSDKIFDDAQNCLANRPEQRDSDKCSSVLKKSVDCGSCGGGFPGAPMTPDDPYDQSPDPRHRSPPPPITYPPETVDASVPPSPFESSPPTSHSPPSPTQSYPPSSVPSSPPSSVPSSPQSSVPSSPPSSVPSSPPSSVPSSPPTVQSPPTPVQSPPPPVQSPPPPVQSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVYSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVFSPPPPVHSPPPPVQSPPPPSTLHHHPLFTPHHHQSNLHHLRLHFLLLLPVLLHRRPSKTSSSHQISVSNTHRRLHHSSPATNYVFHTH 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 64911250 64913609 - Tan0016173.1 Tan06g2003 756707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2003 758 Pfam Leucine rich repeat N-terminal domain 78 110 IPR013210 -
Tan06g2003 758 FunFam Leucine-rich repeat receptor protein kinase EMS1 234 328 - -
Tan06g2003 758 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Tan06g2003 758 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515(InterPro)
Tan06g2003 758 SUPERFAMILY L domain-like 84 347 - -
Tan06g2003 758 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 648 IPR051582 -
Tan06g2003 758 Gene3D Ribonuclease Inhibitor 76 242 IPR032675 -
Tan06g2003 758 FunFam Leucine-rich repeat extensin-like protein 1 75 233 - -
Tan06g2003 758 MobiDBLite consensus disorder prediction 415 694 - -
Tan06g2003 758 MobiDBLite consensus disorder prediction 398 702 - -
Tan06g2003 758 Gene3D Ribonuclease Inhibitor 243 386 IPR032675 -
Tan06g2003 758 MobiDBLite consensus disorder prediction 729 758 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2003 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4848 Tan-Chr1:114211412 Tan06g2003 Tan-Chr6:64911250 6.40E-54 dispersed
Tan06g2003 Tan-Chr6:64911250 Tan08g0179 Tan-Chr8:1557380 2.50E-37 dispersed
Tan06g2003 Tan-Chr6:64911250 Tan09g1311 Tan-Chr9:65422738 1.70E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4848 . 44 390 Leucine-rich Repeat extension Gene Families AT1G62440 64.3 2.8e-55 214.5
Tan10g0798 . 45 370 Leucine-rich Repeat extension Gene Families AT1G62440 63.3 1.6e-50 198.7
Tan08g0179 . 71 240 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 4.6e-42 170.6
Tan09g1311 . 54 222 Leucine-rich Repeat extension Gene Families AT1G62440 68.6 1.5e-40 165.6
Tan09g1311 . 20 409 Leucine-rich Repeat extension Gene Families AT4G13340 73.7 2.6e-66 251.1
Tan08g0179 . 13 415 Leucine-rich Repeat extension Gene Families AT4G13340 70.2 3.8e-57 220.7
Tan10g0798 . 45 372 Leucine-rich Repeat extension Gene Families AT4G13340 70.5 6.0e-55 213.4
Tan01g4848 . 31 260 Leucine-rich Repeat extension Gene Families AT4G13340 61.2 1.1e-48 192.6
Tan06g2003 . 21 225 Leucine-rich Repeat extension Gene Families AT4G13340 64.9 5.1e-38 157.1
Tan09g1311 . 29 393 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 1.6e-69 261.2
Tan08g0179 . 46 414 Leucine-rich Repeat extension Gene Families AT3G24480 72.4 5.1e-63 239.6
Tan10g0798 . 45 372 Leucine-rich Repeat extension Gene Families AT3G24480 66.9 4.3e-54 209.9
Tan01g4848 . 30 260 Leucine-rich Repeat extension Gene Families AT3G24480 62.2 4.8e-53 206.5
Tan06g2003 . 30 397 Leucine-rich Repeat extension Gene Families AT3G24480 58.6 8.8e-39 159.1
Tan10g0798 . 15 371 Leucine-rich Repeat extension Gene Families AT3G22800 71.5 8.0e-74 275.4
Tan02g0208 . 61 390 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 2.0e-40 164.5
Tan01g4848 . 61 390 Leucine-rich Repeat extension Gene Families AT3G22800 58.0 2.0e-40 164.5
Tan09g1311 . 66 394 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 3.0e-36 150.6
Tan09g1311 . 40 398 Leucine-rich Repeat extension Gene Families AT5G25550 62.6 1.6e-39 161.4
Tan08g0179 . 57 237 Leucine-rich Repeat extension Gene Families AT5G25550 72.4 1.3e-38 158.3
Tan10g0798 . 11 371 Leucine-rich Repeat extension Gene Families AT5G25550 52.8 2.5e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92