Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2055 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCGTTCTATATGCAGAGGGGAATTAACAACTCTGGCTCTGGAGCACAGGGCTTGCGTTCCTCAACTAACCCAAATGTGGCATTTCAGCCCAACACTGGTGGCAACAATGTTGGATCAGGGTTGCCAATGGATCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTGGTTGCGAGCGAGCCGGTGAAACGGAAGCGAGGTCGGCCACGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCTCCATCTGCTCCAAATCCAGCCACAGTAGCTTCTTCCCCGAAGCGGGGAAGGGGACGGCCTCCCGGGTCAGGAAAGAAGCAACAATTAGCTTCTCTTGGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGACGTTGCTGCCAAAATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCAGTCTCCACTGTAACTCTTCGGCAGCCTTCGACTTCGGGAGGCACTGTCACGTACGAGGGGCGTTTTGAGATAATATGTCTGTCGGGATCATACGCTCTTGGAGAAACTGCTGGTTCTAGGAACCGCACTGGTGGTTTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTTATCGGCGGTGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCGAAGTACAAGAAGAGGGAATCTATTGAAGGCGTGATTGACTCGGATCATCAGGCGGTAGATCACGCAGTTGCGATTGCGAACGTGCAGCAGAATCAGAATCTGACTCCGACGTCCTCAGTTAGTATGTGGCCGTCATCGCAGTCACTGGACATGCGCAATGCCCACATGGACATCGATCTGATGCGCGGGTGA 1005 52.54 MDRRDPMALSGSQSFYMQRGINNSGSGAQGLRSSTNPNVAFQPNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPATVASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGETAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKRESIEGVIDSDHQAVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHMDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66875193 66880167 + Tan0011838.2 Tan06g2055 756759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2055 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Tan06g2055 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Tan06g2055 334 CDD DUF296 150 264 IPR005175 -
Tan06g2055 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Tan06g2055 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Tan06g2055 334 Gene3D - 151 285 - -
Tan06g2055 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Tan06g2055 334 MobiDBLite consensus disorder prediction 11 52 - -
Tan06g2055 334 MobiDBLite consensus disorder prediction 98 114 - -
Tan06g2055 334 MobiDBLite consensus disorder prediction 1 135 - -
Tan06g2055 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Tan06g2055 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Tan06g2055 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 276 - -
Tan06g2055 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2055 Tan-Chr6:66875193 Tan07g1659 Tan-Chr7:67954370 1.00E-78 dispersed
Tan06g2054 Tan-Chr6:66875193 Tan06g2055 Tan-Chr6:66875193 1.20E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2055 - - - 0.0