Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2109 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGTCGGCGGAGGCGGTGGTGCTCGAATCGTTGCCGATTTACCCTACGCGAACAACAACACCACTGCCGCCAACAATAACGCTACCGGCGGCATCGGCGGCGGCGGAAATATGCCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGAGATTTAGCTGCCCGACTGCCTGAGGGTTTCGAGCATAATGTTGGGAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGATCACGACGCCGCCGACAACCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAACTTGAAGCTGTTTTCAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGAAGGCTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGGAGGACTCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTAAGACAGGAGAATGATAAGCTTAGAGCTGAGAACATGTCCATTCGTGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGCGGTCCGGCAATTATCGGAGAGATTTCACTGGAAGAGCAGCAGTTGAGGATTGAGAATGCTCGACTGAAGGATGAGTTGGACCGGGTTTGTGCGCTCGCCGGGAAGTTTCTTGGCAGACCAATTTCGTCGTTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCCAGTCTGGAACTGGGGGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGTCGTCAATGCCTATTGGGCCAGATTTTGGAGGTGGGTTGTCGGGTAATCTGGCTGTCGTACAGCCACCTGCAAGGCAAACGCCGGGAATGGGACTTGATCGGTCGGTGGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAAATGGCTCAGACGGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGCGGAAGAGAAATACTGAACCAGGAAGAGTACATGAGGACATTCACTCCTTGCATCGGCATGAAACCGAACGGATTTGTCACCGAGGCATCGAGAGAAACTGGCATGGTGATCATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGTCTGATTGCTCGAACCACGACCACCGATGTGATCTCTGGTGGCATGGGCGGAACGAGGAACGGTGCCCTTCAACTTATGCACGCCGAGCTTCAAGTGCTCTCGCCGTTGGTACCGGTCCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTCGTCGACGTATCGGTCGACGCCATGAGAGAGACTCCAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTCCACCAGCTATATCGGCCCCTTCTCAGCTCCGGTATGGGGTTCGGAGCGCAACGGTGGGTCGCCACCCTTCAACGTCAATGCGAATGCCTCGCCATCCTCATGTCATCCGCCGTACCAGTCCGAGATCACACTGCCATAACCTCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACAGCCAACTTCTGCGCAGGCGTGTGCGCATCAACGGTGCACAAATGGAACAAGCTGAACGCCGGGAGTGTGGACGAGGACGTCCGTGTCATGACACGAAAGAGCGTGGACGACCCTGGTGAGCCACCAGGCATTGTATTAAGTGCTGCTACGTCGGTATGGCTGCCAGTACCGGCCCAACGACTCTTCGACTTCCTCCGGGACGAGCGGTTGAGGAGCGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATAGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACGTGCATAGACGCGGCCGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCCGCGATGCACGTCGTGATGAACGGCGGCGATTCGGCCTACGTGGCGCTTCTGCCGTCGGGGTTTGCTATAGTACCTGACGGAGCGGTGAGCCGGGGGTTGACAACGACGAATGGGAGCAGCCCAAGTGGCGGGGATGGCCCACAGAGCCAGAGGGTCACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACTGTAGAATCGGTTGAAACAGTCAACAATCTCATCTCTTGCACTGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAAACCTGA 2517 55.11 MSFGGFLDGGVGGGGGARIVADLPYANNNTTAANNNATGGIGGGGNMPSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDHDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMASSMPIGPDFGGGLSGNLAVVQPPARQTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTTTTDVISGGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPVRDHTAITSGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVPAQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVSRGLTTTNGSSPSGGDGPQSQRVTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69929122 69935053 - Tan0009618.1 Tan06g2109 756813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2109 838 Pfam START domain 341 566 IPR002913 GO:0008289(InterPro)
Tan06g2109 838 Coils Coil 231 251 - -
Tan06g2109 838 ProSiteProfiles START domain profile. 332 569 IPR002913 GO:0008289(InterPro)
Tan06g2109 838 MobiDBLite consensus disorder prediction 93 140 - -
Tan06g2109 838 SUPERFAMILY Bet v1-like 594 831 - -
Tan06g2109 838 Gene3D - 410 563 IPR023393 -
Tan06g2109 838 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677(InterPro)
Tan06g2109 838 MobiDBLite consensus disorder prediction 94 132 - -
Tan06g2109 838 Pfam Homeodomain 133 188 IPR001356 GO:0003677(InterPro)
Tan06g2109 838 FunFam Homeobox-leucine zipper protein HDG1 120 206 - -
Tan06g2109 838 CDD START_ArGLABRA2_like 336 565 - -
Tan06g2109 838 SUPERFAMILY Bet v1-like 334 566 - -
Tan06g2109 838 SUPERFAMILY Homeodomain-like 115 190 IPR009057 -
Tan06g2109 838 CDD homeodomain 132 190 IPR001356 GO:0003677(InterPro)
Tan06g2109 838 Coils Coil 184 216 - -
Tan06g2109 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 111 837 IPR042160 -
Tan06g2109 838 SMART HOX_1 131 194 IPR001356 GO:0003677(InterPro)
Tan06g2109 838 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan06g2109 838 Gene3D - 120 206 - -
Tan06g2109 838 SMART START_1 341 566 IPR002913 GO:0008289(InterPro)
Tan06g2109 838 MobiDBLite consensus disorder prediction 768 787 - -
Tan06g2109 838 FunFam Homeobox-leucine zipper protein GLABRA 2 341 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0273 Tan-Chr1:2316276 Tan06g2109 Tan-Chr6:69929122 3.30E-266 dispersed
Tan04g2664 Tan-Chr4:86005115 Tan06g2109 Tan-Chr6:69929122 3.60E-148 dispersed
Tan05g3114 Tan-Chr5:83299086 Tan06g2109 Tan-Chr6:69929122 1.80E-202 dispersed
Tan06g0291 Tan-Chr6:2295997 Tan06g2109 Tan-Chr6:69929122 1.10E-133 dispersed
Tan06g2109 Tan-Chr6:69929122 Tan10g0284 Tan-Chr10:2429494 8.40E-284 dispersed
Tan06g2109 Tan-Chr6:69929122 Tan02g0328 Tan-Chr2:2703797 4.00E-225 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27806 PF01852 START 7.40E-59 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2109 K09338 - csv:101222248 1519.6