Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2129 ATGTCCCATCTTCCCTCTTTGTGGGTCCAATCTCCCTTTTCCATTTCCACATTATTATTAATCACCCCCATTTTCCCATCTTTTTCCATTTTCCACCCCCTTTATATACCTTATTCCATTTCTTACCCTAAATCCCCTGTTCTCACTTCTTGCTCTCCTTCCTTTCTTCTTCTTCCTCCTCTCTCCGATTTCCGTCCTCTGACCATGGCAGATATACAGAAACAAGAACTTGACGACGATGATGACTCTCGGGCCACCGACCTTCGGATCAATGACTCCGACACCTCTCGAATTGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCATCCCGACTCCGATGACTCCAAGCTCCCGCCGTCCGAAATTCAGGTCGTCAAGTTCACGGCGGATATTGCTAAAACGGTGTCAGCTCTCACGCCGAAGAGGGCGTCCACAAAGGATCGTCACACCAAAGTCGAGGGCCGCGGCCGGAGGATTCGGATTCCGGCCACCTGTGCGGCTCGTATCTTTCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGGTGGCTTCTCGAGCGTGCCGAGCCGGCGATCATTGCCGCTACTGGGACTGGTACCATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCTTCTTCTTACCAAGATTCCACCGACCAATCCGCCGGTAAGAAGCGGCGTAAACGCCCCGCTAATAGTGATTACGTTGACGTCAACGACGCCGTTTCCGTCTCCGTCTCCAACGGCGTCGTCCACGCCGGTACCGCTACCACCGCCGCCGTGCAACAGGCTTTTCCGCCGGGATTCGTTCCGGTGTGGGCCATCCCATCAAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCGTGCTCTTCCACCCGTCCGCAGTTGTTTTCATTTCCGGCTCCGGCGGCGCAGCTTATCAACACGACGGCACGGCCCATTTCCACCGTCCCGTCGAAGCCGGACACATCTCACATTCAGTCGAGCCCCACCAATCAAAGCTCGAGCACTTCGAGTTCTACCGCTTCCAAATCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTTCCGACGACCAGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATGCGATAAGGAAGAGCTTCAATTCATGTCTCGCTCCTCCTCAAAACATTGA 1224 54.58 MSHLPSLWVQSPFSISTLLLITPIFPSFSIFHPLYIPYSISYPKSPVLTSCSPSFLLLPPLSDFRPLTMADIQKQELDDDDDSRATDLRINDSDTSRIDLLALAPKQEHPDSDDSKLPPSEIQVVKFTADIAKTVSALTPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSYQDSTDQSAGKKRRKRPANSDYVDVNDAVSVSVSNGVVHAGTATTAAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAQLINTTARPISTVPSKPDTSHIQSSPTNQSSSTSSSTASKSQSVMAPISSSTVPTTSKTTTQMLRDFSLEICDKEELQFMSRSSSKH 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70499293 70501537 + Tan0022158.1 Tan06g2129 756833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2129 407 MobiDBLite consensus disorder prediction 232 246 - -
Tan06g2129 407 MobiDBLite consensus disorder prediction 329 379 - -
Tan06g2129 407 ProSiteProfiles TCP domain profile. 145 199 IPR017887 -
Tan06g2129 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 123 351 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan06g2129 407 MobiDBLite consensus disorder prediction 219 246 - -
Tan06g2129 407 Pfam TCP family transcription factor 144 242 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0307 Tan-Chr1:2601870 Tan06g2129 Tan-Chr6:70499293 6.60E-49 dispersed
Tan06g2129 Tan-Chr6:70499293 Tan07g0081 Tan-Chr7:2962588 2.30E-29 dispersed
Tan06g2129 Tan-Chr6:70499293 Tan05g3331 Tan-Chr5:85117847 2.30E-29 transposed
Tan06g2129 Tan-Chr6:70499293 Tan07g0080 Tan-Chr7:2962588 2.30E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27808 PF03634 TCP 8.70E-30 No_clan Tan TF