Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2137 ATGGGAAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGGCAAGTCACTTTCTCAAAACGCAGAAATGGACTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAAGTCGCTTTGATCATCTTCTCCAGTCGCGGCAAGCTCTACGAATTTGGCAGTGCTGGAATGACCAGAACATTGGAACGCTACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACACTGAACGACAAACCCAGAATTGGTTCCAGGAAATCACAAAACTGAAAGCAAAATATGAATCTCTTTGTCGGACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACTCAGATCATGATTGAACAGATGGAAGATCTACGCAGAAAGGAGCGTCAACTTGGAGATCTCAACAGAGAGCTTAAGCTCAAGCTAGAGGCAGAGGGACAAAATCTCAAAGTCATCCAAAGTTTTTGGAGCTCTAGCTCTGCTGCTGCTGAACATGGCAACCCCTTCCCATTGCATCCTTCACAAGCTAGCCCTATCGAATGCCAACACGAACCCATCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTTCAAAAGAGCATGGCATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 738 44.31 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGMTRTLERYQRCCFSPQDNYTERQTQNWFQEITKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLKVIQSFWSSSSAAAEHGNPFPLHPSQASPIECQHEPILQIGYQNYFSEEGPSVQKSMACETNFIQGWVI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70791271 70797013 + Tan0004533.1 Tan06g2137 756841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2137 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan06g2137 245 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan06g2137 245 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 Coils Coil 119 171 - -
Tan06g2137 245 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan06g2137 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan06g2137 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 FunFam MADS-box transcription factor 1 13 85 - -
Tan06g2137 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 Gene3D - 13 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2137 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0317 Tan-Chr1:2704902 Tan06g2137 Tan-Chr6:70791271 1.50E-52 dispersed
Tan01g0318 Tan-Chr1:2704902 Tan06g2137 Tan-Chr6:70791271 6.90E-23 dispersed
Tan01g4979 Tan-Chr1:115574713 Tan06g2137 Tan-Chr6:70791271 9.70E-25 dispersed
Tan04g2386 Tan-Chr4:82651246 Tan06g2137 Tan-Chr6:70791271 3.60E-33 dispersed
Tan05g2334 Tan-Chr5:74774199 Tan06g2137 Tan-Chr6:70791271 1.20E-42 dispersed
Tan05g2978 Tan-Chr5:81763610 Tan06g2137 Tan-Chr6:70791271 8.10E-40 dispersed
Tan05g2979 Tan-Chr5:81763610 Tan06g2137 Tan-Chr6:70791271 3.60E-40 dispersed
Tan06g1512 Tan-Chr6:20976690 Tan06g2137 Tan-Chr6:70791271 1.00E-56 dispersed
Tan06g2137 Tan-Chr6:70791271 Tan10g2028 Tan-Chr10:64501337 1.10E-39 dispersed
Tan06g2137 Tan-Chr6:70791271 Tan06g2138 Tan-Chr6:70836650 2.50E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27809 PF01486 K-box 3.90E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2137 K09264 - csv:101219421 402.519