Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2140 ATGGTGAGAGGAAAGACACAGATGAGGTTAATAGAAAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGAGGCGAAATGGGCTGATGAAAAAAGCCTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCTAACTCAAGCATGCAGGCAACTATAGAGCGCTATCGAAAGCATGCAAAAACCAAAGAAGCCCTTGATCCTCCATCTGTTAATAATATGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCAAGCCTCATGAAGAAAATAGAGCAACTTGAAGTTGCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATTGATGAACTTCAACAGCTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACATTTAAAGCAAAAGGAGAAAATCTTGGAAACTGAAAATGCTAAGCTACTTGAAAAGTGGGAAAGTGAACCAGAAGGAGGAGTAAAGGTAGAAAGAGGAGAGAATTTGATAAACTATGCAGAAAGTAGCAGCCCAAGTTCAGAAGTGGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCCAGAAGATTTCTTTCCCTTAACTGA 672 40.48 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATIERYRKHAKTKEALDPPSVNNMQLEHLNHEEAASLMKKIEQLEVAKRKMLGEDLGSCSIDELQQLEHQLEKSVCKIRARKIEVFEEQIKHLKQKEKILETENAKLLEKWESEPEGGVKVERGENLINYAESSSPSSEVETELFIGPPETRPRRFLSLN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70836650 70853290 - Tan0016294.3 Tan06g2140 756844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2140 223 Coils Coil 146 173 - -
Tan06g2140 223 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan06g2140 223 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan06g2140 223 Pfam K-box region 93 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan06g2140 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 Coils Coil 97 117 - -
Tan06g2140 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g2140 223 FunFam MADS-box transcription factor 1 13 84 - -
Tan06g2140 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2138 Tan-Chr6:70836650 Tan06g2140 Tan-Chr6:70836650 5.00E-119 dispersed
Tan06g2140 Tan-Chr6:70836650 Tan10g0311 Tan-Chr10:2588016 2.60E-59 dispersed
Tan06g2139 Tan-Chr6:70836650 Tan06g2140 Tan-Chr6:70836650 5.00E-119 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27812 PF01486 K-box 1.60E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2140 - - - 0.0