Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g2140 | ATGGTGAGAGGAAAGACACAGATGAGGTTAATAGAAAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGAGGCGAAATGGGCTGATGAAAAAAGCCTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCTAACTCAAGCATGCAGGCAACTATAGAGCGCTATCGAAAGCATGCAAAAACCAAAGAAGCCCTTGATCCTCCATCTGTTAATAATATGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCAAGCCTCATGAAGAAAATAGAGCAACTTGAAGTTGCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATTGATGAACTTCAACAGCTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACATTTAAAGCAAAAGGAGAAAATCTTGGAAACTGAAAATGCTAAGCTACTTGAAAAGTGGGAAAGTGAACCAGAAGGAGGAGTAAAGGTAGAAAGAGGAGAGAATTTGATAAACTATGCAGAAAGTAGCAGCCCAAGTTCAGAAGTGGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCCAGAAGATTTCTTTCCCTTAACTGA | 672 | 40.48 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATIERYRKHAKTKEALDPPSVNNMQLEHLNHEEAASLMKKIEQLEVAKRKMLGEDLGSCSIDELQQLEHQLEKSVCKIRARKIEVFEEQIKHLKQKEKILETENAKLLEKWESEPEGGVKVERGENLINYAESSSPSSEVETELFIGPPETRPRRFLSLN | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 70836650 | 70853290 | - | Tan0016294.3 | Tan06g2140 | 756844 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g2140 | 223 | Coils | Coil | 146 | 173 | - | - | |
Tan06g2140 | 223 | SUPERFAMILY | SRF-like | 3 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 185 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan06g2140 | 223 | CDD | MADS_MEF2_like | 3 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Tan06g2140 | 223 | Pfam | K-box region | 93 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan06g2140 | 223 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | Coils | Coil | 97 | 117 | - | - | |
Tan06g2140 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan06g2140 | 223 | FunFam | MADS-box transcription factor 1 | 13 | 84 | - | - | |
Tan06g2140 | 223 | ProSiteProfiles | K-box domain profile. | 90 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g2138 | Tan-Chr6:70836650 | Tan06g2140 | Tan-Chr6:70836650 | 5.00E-119 | dispersed | |
Tan06g2140 | Tan-Chr6:70836650 | Tan10g0311 | Tan-Chr10:2588016 | 2.60E-59 | dispersed | |
Tan06g2139 | Tan-Chr6:70836650 | Tan06g2140 | Tan-Chr6:70836650 | 5.00E-119 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27812 | PF01486 | K-box | 1.60E-24 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g2140 | - | - | - | 0.0 |