Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2152 ATGGATGGAATTACACCCCACAATCGCTCTCTTCCTCATCCTTTTCTCTCTAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCATAACTCCGACGACGACCACAGCGCCGCCGGATCTAAGAGAGACCACGACGAGGAAAACCCCACCACGGCTGCGCCGGACACCAAAGAATTATCCAATTCCTCTTCTCGACGCCCACGTGGCCGACCCGCCGGTTCCAAAAACAAACCGAAGCCACCCATTATTATCACTAGAGACAGCGCCAACGCCCTCAGATCCCATCTCATCGAAATCTCCTCCGCTTCCGACATCGTCGACGCTCTCGCCGCCTTCGCGCGTCGGCGACAGCGTGGCGTTTGTATTTTAAGCGCCACCGGAACCGTCGCCAACGTCACTCTCCGCCAGCCGGCCTCTCCCGGCGGCGCTGTCATCACCTTACCTGGCAGATTTGAAATTCTCTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCGGCCGCCTCCGGGCTGACCGTCTACTTGGCAGGCGGCCAGGGGCAGGTCGTCGGCGGGAATGTCATCGGCCCACTTTCGGCGTCCGGTCCGGTTATTATTATGGCGGCTTCATTTGGGAATGCGGCGTATGAACGGCTCCCCATTGATGACGACGACGAAACTTCCCCGGCGGCGGAGATGGCTGGACAACAGGCGCCGCCGCAATTGGTGGGGGATCCTAATGGCGGATTGTTTCATGGGGTGGCGCAGAATGTTGTGAATTCTTCATGTCAATTGCCGGCGGACGCGGCGGCGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTATTGA 837 59.86 MDGITPHNRSLPHPFLSKDLHLHHGLFHHHHNSDDDHSAAGSKRDHDEENPTTAAPDTKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISSASDIVDALAAFARRRQRGVCILSATGTVANVTLRQPASPGGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEMAGQQAPPQLVGDPNGGLFHGVAQNVVNSSCQLPADAAAAAYWGGGRPPY 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 71260477 71261313 - Tan0018364.1 Tan06g2152 756856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2152 278 CDD DUF296 95 207 IPR005175 -
Tan06g2152 278 Gene3D - 94 225 - -
Tan06g2152 278 MobiDBLite consensus disorder prediction 27 85 - -
Tan06g2152 278 MobiDBLite consensus disorder prediction 55 71 - -
Tan06g2152 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 236 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Tan06g2152 278 FunFam AT-hook motif nuclear-localized protein 94 223 - -
Tan06g2152 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Tan06g2152 278 MobiDBLite consensus disorder prediction 218 238 - -
Tan06g2152 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Tan06g2152 278 ProSiteProfiles PPC domain profile profile. 91 232 IPR005175 -
Tan06g2152 278 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5168 Tan-Chr1:116753349 Tan06g2152 Tan-Chr6:71260477 1.50E-60 dispersed
Tan01g5169 Tan-Chr1:116753349 Tan06g2152 Tan-Chr6:71260477 1.50E-60 dispersed
Tan02g0538 Tan-Chr2:4800836 Tan06g2152 Tan-Chr6:71260477 1.10E-56 dispersed
Tan06g2152 Tan-Chr6:71260477 Tan07g1754 Tan-Chr7:69092337 6.80E-65 dispersed
Tan10g0346 Tan-Chr10:2803196 Tan06g2152 Tan-Chr6:71260477 5.20E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2152 - - - 0.0