Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2154 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGGACTGCCAGTGCCGGCGGGGGTGGCGGCGGCGGAGGACCATGTGGGGCCTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCTGCCCACTTCGCCGCCGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAACTCCTCCTTCATATTCCCGTTCACAAACGTCTCGACGCTGTCGTTACGATTTGCTACGAGGCTCAGGCTCGCCTCCGAGACCCCGTCTATGGTTGCGTCGCTCATATCTTTGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAACTGTCGTACCTCCAAGCCCATCTAGCAACACTGGAGCTGCCGTCGCCACCGCACCCACCGCCGCCTCCTCCGCCGGCAAGTTTTCCGGCGCAACCGCCGCTCTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTTCCGGCCACCTACGACTTGTCGTCACTCTTTGACCCAATGGGTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTTGACCACCGCCAGTTCGCCGGGGGTGGCGGCGGCGGATCGTCCACAGCGGCCGGAGAGGGCGACCTTCAAGCCTTGGCCCGTGAACTCCTCCATAGACATGGCGCTCCGCCGTGTTCCGACACCTCGTCGCCGCCGTCGCTCTCTAAATGA 720 62.08 MSANPSTSGGGGPGTASAGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPHPPPPPPPASFPAQPPLSISDLPSASSLPATYDLSSLFDPMGQPAWAMQQQRLDHRQFAGGGGGGSSTAAGEGDLQALARELLHRHGAPPCSDTSSPPSLSK 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 71327896 71331201 - Tan0008188.1 Tan06g2154 756858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2154 239 ProSiteProfiles LOB domain profile. 26 128 IPR004883 -
Tan06g2154 239 MobiDBLite consensus disorder prediction 133 151 - -
Tan06g2154 239 MobiDBLite consensus disorder prediction 1 22 - -
Tan06g2154 239 Pfam Lateral organ boundaries (LOB) domain 27 125 IPR004883 -
Tan06g2154 239 MobiDBLite consensus disorder prediction 189 239 - -
Tan06g2154 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 161 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Tan06g2154 239 MobiDBLite consensus disorder prediction 132 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2154 Tan-Chr6:71327896 Tan07g2230 Tan-Chr7:73746238 2.40E-42 dispersed
Tan06g2154 Tan-Chr6:71327896 Tan06g2155 Tan-Chr6:71371337 2.80E-43 tandem
Tan04g0267 Tan-Chr4:2119646 Tan06g2154 Tan-Chr6:71327896 2.10E-34 transposed
Tan06g1134 Tan-Chr6:11283057 Tan06g2154 Tan-Chr6:71327896 2.50E-39 transposed
Tan10g1658 Tan-Chr10:34729835 Tan06g2154 Tan-Chr6:71327896 5.10E-40 transposed
Tan10g0350 Tan-Chr10:2839583 Tan06g2154 Tan-Chr6:71327896 5.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27813 PF03195 LOB 1.90E-38 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2154 K21994 - csv:101220603 381.719