Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2170 ATGGAGGGACCAACTGGTCGTGGTGGCGGTGGCATGGATATGAATTTACCAAACTATAAGCTTGGAAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCTGAGCATGCTTTAACTGGCCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCACACATTATACGGCTCTATGAAGTTATAGAGACTCCAGCAGACATTTATGTTGTAATGGAGTATGTAAAATCTGGAGAGCTCTTTGATTATATCGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTAATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCTCTTCTTTGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGGATCTATACACTTCCAAGTCACTTATCATCAGGTGCTAGAGAACTGATTCCTAGTATGCTGGTTGTTGACCCAATGAAGCGCATCACAATCCCTGAGATTCGACAGCACCCATGGTTTCAGGCTCATCTTCCGCGTTATTTAGCCGTGCCTCCACCCGATACAATGCAACAAGCAAAAAAGATTGATGAAGACATTCTTCAGGAGGTTGTGAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCCCTTCGTAACAGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACGGGATTCAACCGTATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGATATATGGATTATCAAGGAATGGGCTTAAGATCACAGTTTCCAGTTGAGAGAAAGTGGGCTCTGGGATTACAGTCTCGAGCTCATCCCCGTGAAATTATGACCGAAGTCCTTAAAGCCTTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGTCACTACAACATGAAATGCAGGTGGTTACCTGGAATTCCAGGGCATCATGAAGGCATGATTAACAACCCTGTGCATAATAATCATTACTTTGGGGACGAGCCGGCCATCATTGAAAACGATGGCGTTGTAAAATCGCCAAATGTTATTAAGTTTGAAGTTCAGCTCTACAAAACACGAGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCACAGCTCCGGGTCCTCTAA 1548 43.09 MEGPTGRGGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHNNHYFGDEPAIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 71694659 71703635 - Tan0008307.1 Tan06g2170 756874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2170 515 CDD UBA_SnRK1_plant 293 333 - -
Tan06g2170 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Tan06g2170 515 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Tan06g2170 515 FunFam Non-specific serine/threonine protein kinase 395 513 - -
Tan06g2170 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Tan06g2170 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Tan06g2170 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Tan06g2170 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Tan06g2170 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515(InterPro)
Tan06g2170 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2170 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Tan06g2170 515 CDD AMPKA_C 389 512 - -
Tan06g2170 515 SUPERFAMILY Protein kinase-like (PK-like) 16 286 IPR011009 -
Tan06g2170 515 CDD STKc_AMPK_alpha 16 271 - -
Tan06g2170 515 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Tan06g2170 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Tan06g2170 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g2170 515 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2170 515 SMART uba_6 294 331 IPR015940 -
Tan06g2170 515 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 291 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan06g2170 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2170 515 Gene3D Transferase(Phosphotransferase) domain 1 12 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0262 Tan-Chr5:1983535 Tan06g2170 Tan-Chr6:71694659 2.20E-34 dispersed
Tan06g2170 Tan-Chr6:71694659 Tan07g1149 Tan-Chr7:40503015 1.60E-168 dispersed
Tan06g2170 Tan-Chr6:71694659 Tan03g2727 Tan-Chr3:80210878 1.10E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67808 PF00069 Pkinase 2.60E-80 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2170 K07198 - csv:101211720 1009.21