Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2294 ATGGCGGGCCTATCGCTCAAGTGTGGGGATTGTGGCGCACTCTTGAGATCCGTTGAAGAAGCTCAAGAACACGCTGAACTCACTTCTCATTCCAACTTCTCTGAGTCCACTGAGGCTGTTCTCAATCTCATATGCACTACTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCAATAAGCTTGGAGACCCCGAAGGTAGCTGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGTAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACACGAATATATTAGAGGAGCTTGAAGCTATGGGCTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCGGAGATTGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAACTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAAGAGGAGAAGATAGCGGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGGAAGGAGCTCTTAGAAGCTAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAGAGAAGACGGAGACTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTCCAGCACCTGTTGTTGAAGAGAAAAAGATCTCATTGCCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCGTTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGCAAAAAATCCTGATGAAGAGAAGTTCAGAAAGATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGGGGAATTGAGTTTCTAGAGTTGTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGAGACAAGGTTGATAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCGACTCTGCAATAAAGAATCCCTTCTTTGGTGTTCTCTAA 1236 45.55 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTTCGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLETPKVAAESEDGGDASASKSEEMVVPEVNTNILEELEAMGFPTARATRALYYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKISLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74063945 74078481 - Tan0009454.1 Tan06g2294 756998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2294 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515(InterPro)
Tan06g2294 411 Coils Coil 181 215 - -
Tan06g2294 411 Pfam UBA-like domain 112 159 IPR015940 -
Tan06g2294 411 SMART PGNneu 321 384 - -
Tan06g2294 411 MobiDBLite consensus disorder prediction 183 208 - -
Tan06g2294 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Tan06g2294 411 MobiDBLite consensus disorder prediction 252 270 - -
Tan06g2294 411 Gene3D - 113 157 - -
Tan06g2294 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Tan06g2294 411 Pfam PUB domain 318 389 IPR018997 -
Tan06g2294 411 CDD PUB_UBA_plant 305 411 - -
Tan06g2294 411 CDD UBA_PUB_plant 110 158 - -
Tan06g2294 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Tan06g2294 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Tan06g2294 411 Coils Coil 224 261 - -
Tan06g2294 411 MobiDBLite consensus disorder prediction 167 208 - -
Tan06g2294 411 MobiDBLite consensus disorder prediction 77 106 - -
Tan06g2294 411 MobiDBLite consensus disorder prediction 252 281 - -
Tan06g2294 411 SMART uba_6 112 150 IPR015940 -
Tan06g2294 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Tan06g2294 411 Gene3D - 303 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2294 Tan-Chr6:74063945 Tan08g0796 Tan-Chr8:8952864 7.00E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2294 K24348 - csv:101215434 690.263