Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2304 ATGGCATCGACTTCTTTCGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCTCCACCACAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCATGGAGGTCACTTCTCGCGGTGGCATTGAGAAGGTGATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCAACAATTCCTACGCAAGGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGTCCCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCAAGTTCGACATCACCAGTAGGAGGGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACCACACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTGAGCTTTGGAACAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATGGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGCCTATGCTGACAAAAACGAAGAAACCGAGGGTGGTGACTCTCAAACACCAGATCATGATACAAGCTATGTTGAAGGCGACTCTGGAGAATATAAAACCGAAGAGAAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAGGATTCAGAAGATGACGCATCTCCACAAGGAGTTAGCAATGTGGATGTTAACATTTTGGTTGAGGAGGAACATTGTGAGACGAGAACAGCTGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGTGACGATAAGGAAGTCTTTGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGCACCAACAACAGCCATTAGAGAAGATTAA 1449 46.45 MASTSFAGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQGITSMLPPPSDNQAASQQPQTTATELPAVAPSSTSPVGGFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKESERTVYQEKAMKDKERYRMEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMAYADKNEETEGGDSQTPDHDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEDDASPQGVSNVDVNILVEEEHCETRTAEEDVRKESSTVGDDKEVFAGDSVMVEAKEEPAPTTAIRED 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74192862 74199577 - Tan0005927.1 Tan06g2304 757008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2304 482 Gene3D High mobility group box domain 255 350 IPR036910 -
Tan06g2304 482 MobiDBLite consensus disorder prediction 371 482 - -
Tan06g2304 482 Pfam HMG (high mobility group) box 271 338 IPR009071 -
Tan06g2304 482 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Tan06g2304 482 MobiDBLite consensus disorder prediction 143 182 - -
Tan06g2304 482 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 389 - -
Tan06g2304 482 MobiDBLite consensus disorder prediction 431 465 - -
Tan06g2304 482 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Tan06g2304 482 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Tan06g2304 482 SUPERFAMILY HMG-box 264 343 IPR036910 -
Tan06g2304 482 SMART hmgende2 270 339 IPR009071 -
Tan06g2304 482 SMART ARID_2 32 122 - -
Tan06g2304 482 MobiDBLite consensus disorder prediction 226 278 - -
Tan06g2304 482 Coils Coil 320 340 - -
Tan06g2304 482 SUPERFAMILY ARID-like 31 138 IPR036431 GO:0003677(InterPro)
Tan06g2304 482 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Tan06g2304 482 MobiDBLite consensus disorder prediction 396 418 - -
Tan06g2304 482 CDD HMG-box_AtHMGB9-like 271 337 - -
Tan06g2304 482 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Tan06g2304 482 FunFam High mobility group B protein 15 29 141 - -
Tan06g2304 482 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 271 338 IPR009071 -
Tan06g2304 482 MobiDBLite consensus disorder prediction 143 184 - -
Tan06g2304 482 FunFam High mobility group B protein 15 253 348 - -
Tan06g2304 482 Coils Coil 392 418 - -
Tan06g2304 482 MobiDBLite consensus disorder prediction 251 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5063 Tan-Chr1:116176721 Tan06g2304 Tan-Chr6:74192862 6.50E-75 dispersed
Tan06g2304 Tan-Chr6:74192862 Tan06g2306 Tan-Chr6:74192862 4.70E-263 dispersed
Tan06g2304 Tan-Chr6:74192862 Tan06g2305 Tan-Chr6:74192862 4.70E-263 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27821 PF01388 ARID 1.60E-17 CL0123 Tan TR