Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g2306 | ATGGCATCGACTTCTTTCGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCTCCACCACAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCATGGAGGTCACTTCTCGCGGTGGCATTGAGAAGGTGATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCAACAATTCCTACGCAAGGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGTCCCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCAAGTTCGACATCACCAGTAGGAGGGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACCACACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTGAGCTTTGGAACAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATGGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGCCTATGCTGACAAAAACGAAGAAACCGAGGGTGGTGACTCTCAAACACCAGATCATGATACAAGCTATGTTGAAGGCGACTCTGGAGAATATAAAACCGAAGAGAAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAGGATTCAGAAGATGACGCATCTCCACAAGGAGTTAGCAATGTGGATGTTAACATTTTGGTTGAGGAGGAACATTGTGAGACGAGAACAGCTGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGTGACGATAAGGAAGTCTTTGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGCACCAACAACAGCCATTAGAGAAGATTAA | 1449 | 46.45 | MASTSFAGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQGITSMLPPPSDNQAASQQPQTTATELPAVAPSSTSPVGGFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKESERTVYQEKAMKDKERYRMEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMAYADKNEETEGGDSQTPDHDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEDDASPQGVSNVDVNILVEEEHCETRTAEEDVRKESSTVGDDKEVFAGDSVMVEAKEEPAPTTAIRED | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 74192862 | 74198919 | - | Tan0005927.3 | Tan06g2306 | 757010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g2306 | 482 | Gene3D | High mobility group box domain | 255 | 350 | IPR036910 | - | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 371 | 482 | - | - | |
Tan06g2306 | 482 | Pfam | HMG (high mobility group) box | 271 | 338 | IPR009071 | - | |
Tan06g2306 | 482 | SMART | bright_3 | 36 | 127 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 143 | 182 | - | - | |
Tan06g2306 | 482 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 10 | 389 | - | - | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 431 | 465 | - | - | |
Tan06g2306 | 482 | Pfam | ARID/BRIGHT DNA binding domain | 38 | 122 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | ProSiteProfiles | ARID domain profile. | 35 | 126 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | SUPERFAMILY | HMG-box | 264 | 343 | IPR036910 | - | |
Tan06g2306 | 482 | SMART | hmgende2 | 270 | 339 | IPR009071 | - | |
Tan06g2306 | 482 | SMART | ARID_2 | 32 | 122 | - | - | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 226 | 278 | - | - | |
Tan06g2306 | 482 | Coils | Coil | 320 | 340 | - | - | |
Tan06g2306 | 482 | SUPERFAMILY | ARID-like | 31 | 138 | IPR036431 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | CDD | ARID_HMGB9-like | 37 | 122 | IPR045303 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 396 | 418 | - | - | |
Tan06g2306 | 482 | CDD | HMG-box_AtHMGB9-like | 271 | 337 | - | - | |
Tan06g2306 | 482 | Gene3D | - | 28 | 130 | IPR036431 | GO:0003677(InterPro) | |
Tan06g2306 | 482 | FunFam | High mobility group B protein 15 | 29 | 141 | - | - | |
Tan06g2306 | 482 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 271 | 338 | IPR009071 | - | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 143 | 184 | - | - | |
Tan06g2306 | 482 | FunFam | High mobility group B protein 15 | 253 | 348 | - | - | |
Tan06g2306 | 482 | Coils | Coil | 392 | 418 | - | - | |
Tan06g2306 | 482 | MobiDBLite | consensus disorder prediction | 251 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g2304 | Tan-Chr6:74192862 | Tan06g2306 | Tan-Chr6:74192862 | 4.70E-263 | dispersed | |
Tan06g2306 | Tan-Chr6:74192862 | Tan06g2310 | Tan-Chr6:74302650 | 3.10E-166 | dispersed | |
Tan06g2305 | Tan-Chr6:74192862 | Tan06g2306 | Tan-Chr6:74192862 | 4.70E-263 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27823 | PF01388 | ARID | 1.60E-17 | CL0123 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g2306 | - | - | - | 0.0 |