Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2306 ATGGCATCGACTTCTTTCGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCTCCACCACAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCATGGAGGTCACTTCTCGCGGTGGCATTGAGAAGGTGATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCAACAATTCCTACGCAAGGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGTCCCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCAAGTTCGACATCACCAGTAGGAGGGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACCACACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTGAGCTTTGGAACAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATGGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGCCTATGCTGACAAAAACGAAGAAACCGAGGGTGGTGACTCTCAAACACCAGATCATGATACAAGCTATGTTGAAGGCGACTCTGGAGAATATAAAACCGAAGAGAAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAGGATTCAGAAGATGACGCATCTCCACAAGGAGTTAGCAATGTGGATGTTAACATTTTGGTTGAGGAGGAACATTGTGAGACGAGAACAGCTGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGTGACGATAAGGAAGTCTTTGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGCACCAACAACAGCCATTAGAGAAGATTAA 1449 46.45 MASTSFAGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQGITSMLPPPSDNQAASQQPQTTATELPAVAPSSTSPVGGFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKESERTVYQEKAMKDKERYRMEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMAYADKNEETEGGDSQTPDHDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEDDASPQGVSNVDVNILVEEEHCETRTAEEDVRKESSTVGDDKEVFAGDSVMVEAKEEPAPTTAIRED 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74192862 74198919 - Tan0005927.3 Tan06g2306 757010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2306 482 Gene3D High mobility group box domain 255 350 IPR036910 -
Tan06g2306 482 MobiDBLite consensus disorder prediction 371 482 - -
Tan06g2306 482 Pfam HMG (high mobility group) box 271 338 IPR009071 -
Tan06g2306 482 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Tan06g2306 482 MobiDBLite consensus disorder prediction 143 182 - -
Tan06g2306 482 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 389 - -
Tan06g2306 482 MobiDBLite consensus disorder prediction 431 465 - -
Tan06g2306 482 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Tan06g2306 482 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Tan06g2306 482 SUPERFAMILY HMG-box 264 343 IPR036910 -
Tan06g2306 482 SMART hmgende2 270 339 IPR009071 -
Tan06g2306 482 SMART ARID_2 32 122 - -
Tan06g2306 482 MobiDBLite consensus disorder prediction 226 278 - -
Tan06g2306 482 Coils Coil 320 340 - -
Tan06g2306 482 SUPERFAMILY ARID-like 31 138 IPR036431 GO:0003677(InterPro)
Tan06g2306 482 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Tan06g2306 482 MobiDBLite consensus disorder prediction 396 418 - -
Tan06g2306 482 CDD HMG-box_AtHMGB9-like 271 337 - -
Tan06g2306 482 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Tan06g2306 482 FunFam High mobility group B protein 15 29 141 - -
Tan06g2306 482 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 271 338 IPR009071 -
Tan06g2306 482 MobiDBLite consensus disorder prediction 143 184 - -
Tan06g2306 482 FunFam High mobility group B protein 15 253 348 - -
Tan06g2306 482 Coils Coil 392 418 - -
Tan06g2306 482 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2304 Tan-Chr6:74192862 Tan06g2306 Tan-Chr6:74192862 4.70E-263 dispersed
Tan06g2306 Tan-Chr6:74192862 Tan06g2310 Tan-Chr6:74302650 3.10E-166 dispersed
Tan06g2305 Tan-Chr6:74192862 Tan06g2306 Tan-Chr6:74192862 4.70E-263 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27823 PF01388 ARID 1.60E-17 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2306 - - - 0.0