Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2310 ATGGCATCGACTTCTTTCACTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCATGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTGATAAAAGAGAGAAGATGGAAAGAAGTAATTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTATTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCGACAATTCCTACGCAATGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGCCCCAGCAGTCACGGACTACTGCAACTGAACTTCCAGCAGTTGCTCCGAGTTCGGCATCACCAGTAGGAGCGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACTGCACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAATCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTTTATCAGGAGAAAGCTATGAAAGATAA 942 46.6 MASTSFTGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIKERRWKEVISVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQWITSMLPPPSDNQAAPQQSRTTATELPAVAPSSASPVGAFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLYPGKDREISRMIGLSGESYER 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74302650 74309033 + Tan0019517.1 Tan06g2310 757014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2310 313 FunFam High mobility group B protein 15 29 141 - -
Tan06g2310 313 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Tan06g2310 313 SUPERFAMILY ARID-like 30 138 IPR036431 GO:0003677(InterPro)
Tan06g2310 313 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 306 - -
Tan06g2310 313 SUPERFAMILY HMG-box 258 305 IPR036910 -
Tan06g2310 313 Gene3D High mobility group box domain 254 307 IPR036910 -
Tan06g2310 313 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Tan06g2310 313 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 MobiDBLite consensus disorder prediction 156 183 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 239 280 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 156 180 - -
Tan06g2310 313 SMART ARID_2 32 122 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2305 Tan-Chr6:74192862 Tan06g2310 Tan-Chr6:74302650 3.10E-166 dispersed
Tan06g2306 Tan-Chr6:74192862 Tan06g2310 Tan-Chr6:74302650 3.10E-166 dispersed
Tan06g2310 Tan-Chr6:74302650 Tan06g2312 Tan-Chr6:74302650 5.20E-178 dispersed
Tan06g2310 Tan-Chr6:74302650 Tan06g2311 Tan-Chr6:74302650 5.20E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27824 PF01388 ARID 3.80E-18 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2310 - - - 0.0