Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2310 ATGGCATCGACTTCTTTCACTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCATGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTGATAAAAGAGAGAAGATGGAAAGAAGTAATTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTATTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCGACAATTCCTACGCAATGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGCCCCAGCAGTCACGGACTACTGCAACTGAACTTCCAGCAGTTGCTCCGAGTTCGGCATCACCAGTAGGAGCGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACTGCACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAATCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTTTATCAGGAGAAAGCTATGAAAGATAA 942 46.6 MASTSFTGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIKERRWKEVISVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQWITSMLPPPSDNQAAPQQSRTTATELPAVAPSSASPVGAFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLYPGKDREISRMIGLSGESYER 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74302650 74309033 + Tan0019517.1 Tan06g2310 757014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2310 313 FunFam High mobility group B protein 15 29 141 - -
Tan06g2310 313 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Tan06g2310 313 SUPERFAMILY ARID-like 30 138 IPR036431 GO:0003677(InterPro)
Tan06g2310 313 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 306 - -
Tan06g2310 313 SUPERFAMILY HMG-box 258 305 IPR036910 -
Tan06g2310 313 Gene3D High mobility group box domain 254 307 IPR036910 -
Tan06g2310 313 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Tan06g2310 313 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Tan06g2310 313 MobiDBLite consensus disorder prediction 156 183 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 239 280 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 156 180 - -
Tan06g2310 313 SMART ARID_2 32 122 - -
Tan06g2310 313 MobiDBLite consensus disorder prediction 251 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2310 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2305 Tan-Chr6:74192862 Tan06g2310 Tan-Chr6:74302650 3.10E-166 dispersed
Tan06g2306 Tan-Chr6:74192862 Tan06g2310 Tan-Chr6:74302650 3.10E-166 dispersed
Tan06g2310 Tan-Chr6:74302650 Tan06g2312 Tan-Chr6:74302650 5.20E-178 dispersed
Tan06g2310 Tan-Chr6:74302650 Tan06g2311 Tan-Chr6:74302650 5.20E-178 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27824 PF01388 ARID 3.80E-18 CL0123 Tan TR