Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g2311 | ATGGCATCGACTTCTTTCACTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAGGAGATCGTCGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCATGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTGATAAAAGAGAGAAGATGGAAAGAAGTAATTTCAGTTTTCAACTTTCCTTCAACGGCCACCAATGCGTCTTTCGTTCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTATTTCTTTAAAGCTGTGGGATGGACACCAACAATTTCTGATTCCTCTCCATGCCCAAGTGCAGCGACAATTCCTACGCAATGGATAACCTCTATGTTGCCGCCGCCATCAGATAATCAGGCAGCGCCCCAGCAGTCACGGACTACTGCAACTGAACTTCCAGCAGTTGCTCCGAGTTCGGCATCACCAGTAGGAGCGTTTCCAGTGGTTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCAGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTTTTGCCAAGGATGGCGCTACCTCCACTGCACCAAATGCTCATCGCCGTCGCCGTCGGAAGAAATCCGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAATCATTATACCCAGGGAAGGACAGAGAGATAAGCAGAATGATTGGTTTATCAGGAGAAAGCTATGAAAGATAA | 942 | 46.6 | MASTSFTGGKQLPVIEASSNCVPYPPPQTTYEEIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFMEVTSRGGIEKVIKERRWKEVISVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATIPTQWITSMLPPPSDNQAAPQQSRTTATELPAVAPSSASPVGAFPVVGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQPVLQPGGVFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLYPGKDREISRMIGLSGESYER | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 74302650 | 74309033 | + | Tan0019517.2 | Tan06g2311 | 757015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g2311 | 313 | FunFam | High mobility group B protein 15 | 29 | 141 | - | - | |
Tan06g2311 | 313 | ProSiteProfiles | ARID domain profile. | 35 | 126 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | Pfam | ARID/BRIGHT DNA binding domain | 38 | 122 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | Gene3D | - | 28 | 130 | IPR036431 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | SUPERFAMILY | ARID-like | 30 | 138 | IPR036431 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 11 | 306 | - | - | |
Tan06g2311 | 313 | SUPERFAMILY | HMG-box | 258 | 305 | IPR036910 | - | |
Tan06g2311 | 313 | Gene3D | High mobility group box domain | 254 | 307 | IPR036910 | - | |
Tan06g2311 | 313 | CDD | ARID_HMGB9-like | 37 | 122 | IPR045303 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | SMART | bright_3 | 36 | 127 | IPR001606 | GO:0003677(InterPro) | |
Tan06g2311 | 313 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Tan06g2311 | 313 | MobiDBLite | consensus disorder prediction | 239 | 280 | - | - | |
Tan06g2311 | 313 | MobiDBLite | consensus disorder prediction | 156 | 180 | - | - | |
Tan06g2311 | 313 | SMART | ARID_2 | 32 | 122 | - | - | |
Tan06g2311 | 313 | MobiDBLite | consensus disorder prediction | 251 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g2310 | Tan-Chr6:74302650 | Tan06g2311 | Tan-Chr6:74302650 | 5.20E-178 | tandem | |
Tan06g2311 | Tan-Chr6:74302650 | Tan06g2312 | Tan-Chr6:74302650 | 5.20E-178 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27825 | PF01388 | ARID | 3.80E-18 | CL0123 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g2311 | - | - | - | 0.0 |