Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2325 ATGGCGGTACCTAGTAAATGGCTTTCTCTGTCTCTGTTTGCCCTTGCAATGGTGGCCTTCGTAACAATCGCTCTGGTTCGCAAAGAAGAGACCTCTGAAATCAGGACTGTGTTAAGGACAAAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGTTGGTGAATGATGATGATTTGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACTGGCAATCCCATAGATGACTGCTGGCGATGTGACTCCAATTGGCACCGTAACAGGAAACGCCTTGCCGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGATGGTCGTTTCTATGTCGTCACTGATTCGAGTGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCACGCTGTCATTCAAGAGAAACCTCTTTGGATTGTTTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAACTCATCATGAACAGTTTCAAGACCATTGATGCTCGAGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATTCAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACTATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCGAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCGACCATCAACAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACAGCGGAGAGCGAATGGAAGGGCTGGAACTGGAGATCAGAAGGAGATATGTTGCTGAATGGAGCTTATTTCACCCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCCAGGGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACATCTTCAGCAGGTTCGCTCCCTTGCCGCCGAGGTCATCCCTGCTAG 1350 47.56 MAVPSKWLSLSLFALAMVAFVTIALVRKEETSEIRTVLRTKFQSSSNSSMATRLVNDDDLEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74602422 74606352 + Tan0005660.1 Tan06g2325 757029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Tan06g2325 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tan06g2325 449 FunFam Pectate lyase 100 442 - -
Tan06g2325 449 Pfam Pectate lyase 187 364 IPR002022 -
Tan06g2325 449 SMART amb_all 175 372 IPR002022 -
Tan06g2325 449 PANTHER PECTATE LYASE 18-RELATED 16 446 IPR045032 GO:0030570(InterPro)
Tan06g2325 449 Gene3D - 100 442 IPR012334 -
Tan06g2325 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0640 Tan-Chr4:5408393 Tan06g2325 Tan-Chr6:74602422 3.40E-155 dispersed
Tan05g3058 Tan-Chr5:82843800 Tan06g2325 Tan-Chr6:74602422 3.60E-117 dispersed
Tan06g2325 Tan-Chr6:74602422 Tan10g0580 Tan-Chr10:4745473 5.10E-211 dispersed
Tan06g2325 Tan-Chr6:74602422 Tan06g2326 Tan-Chr6:74603497 4.10E-221 tandem
Tan02g2140 Tan-Chr2:90832898 Tan06g2325 Tan-Chr6:74602422 8.30E-156 transposed
Tan10g0579 Tan-Chr10:4745473 Tan06g2325 Tan-Chr6:74602422 2.30E-219 wgd
Tan06g2325 Tan-Chr6:74602422 Tan07g2128 Tan-Chr7:72582443 6.00E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2325 K01728 - csv:101217580 869.381