Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2326 ATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACTGGCAATCCCATAGATGACTGCTGGCGATGTGACTCCAATTGGCACCGTAACAGGAAACGCCTTGCCGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGATGGTCGTTTCTATGTCGTCACTGATTCGAGTGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCACGCTGTCATTCAAGAGAAACCTCTTTGGATTGTTTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAACTCATCATGAACAGTTTCAAGACCATTGATGCTCGAGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATTCAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACTATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCGAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCGACCATCAACAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACAGCGGAGAGCGAATGGAAGGGCTGGAACTGGAGATCAGAAGGAGATATGTTGCTGAATGGAGCTTATTTCACCCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCCAGGGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACATCTTCAGCAGGTTCGCTCCCTTGCCGCCGAGGTCATCCCTGCTAG 1110 48.02 MSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 74603497 74606352 + Tan0005660.2 Tan06g2326 757030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2326 369 SUPERFAMILY Pectin lyase-like 3 363 IPR011050 -
Tan06g2326 369 SMART amb_all 95 292 IPR002022 -
Tan06g2326 369 PANTHER PECTATE LYASE 18-RELATED 12 366 IPR045032 GO:0030570(InterPro)
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 43 60 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 167 188 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 311 335 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 67 92 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 103 119 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 247 266 IPR018082 -
Tan06g2326 369 PRINTS Pollen allergen Amb family signature 340 363 IPR018082 -
Tan06g2326 369 Pfam Pectate lyase 107 284 IPR002022 -
Tan06g2326 369 Gene3D - 20 362 IPR012334 -
Tan06g2326 369 FunFam Pectate lyase 20 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2326 Tan-Chr6:74603497 Tan10g0579 Tan-Chr10:4745473 1.50E-200 dispersed
Tan06g2325 Tan-Chr6:74602422 Tan06g2326 Tan-Chr6:74603497 4.10E-221 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2326 K01728 - csv:101217580 758.829