Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2339 ATGGTTGTTAAAATGTTATATTGTTGGGACTTTGGGTTGGTTTTGAGTGCGAAATTTGTGGGGGTGATTTTTCTGCTACTGGCTTCTCTGTTTAATACTTCACATGGGTTGAATCCAGAAGGGTATTTTCTCTTGGAGCTGAAAAATGGTCTTTCTGATCCAGATGGTTCGTTGAGAAATTGGGGTTCAAGTGATGAAACACCATGCGGATGGACTGGTGTGAACTGTACTTCTGGTATGGAACGAGTCGTCTATGCTCTTGACTTGAACTCAAAGAATCTTTCGGGTCCTTTAAGCTCGAGCATCGGCAATTTAATCCACCTGACTTATCTTAATCTTTCCTTCAATGGATTCAATGGAAGTATACCAAAAGAGATAGGCAATTGTATGCGGTTGGAATATCTTTCTCTGGAGAACAATAAGTTTGATGGGGAACTTCCATCTGAATTGGGAAAGCTGACTTCTTTGGTTAAGTTGAATATATGTAATAATCAAATCCATGGTTCTTTCCCTGAGGAAATTGGAAATTTAGAATCCTTGTTTGAATTAGTTGCATATACCAACAACATCACGGGTCCGTTGCCTCGTTCTTTTGGGAAACTCAAGAACTTGAGGAGGTTTAGAGCAGGGCAAAATGCGATTTCGGGAAGCCTACCGGCTGAAATAGGTCAGTGTGAAAACTTGGAGATGCTTGGCCTTGCTCAAAATCAGTTAGAAGGGGAATTACCAAAGGAGCTTGGCATGATTAGAAACTTGACTGAATTAGTTCTTTGGGAGAACCAGTTTTCTGGCATTCTACCAAAAGAGCTAGGAAATTGTACAAGACTAACTATGCTTGCTCTCTATGAGAACAATCTTGGTGGACCCATACCCAAGGAATTTGGGAACCTAATTTCTTTGAACAAGTTGTATATATACCGAAACGCGTTGAATGGAACCATTCCGAGGGAGCTCGGGAACCTTTCTCAGGCGATGGAGATAGACTTTTCAGAGAACTATTTGACTGGTGAGATACCTAAAGAGTTTAGTAACATAAAAGGTCTCCAATTACTGTACCTTTTTCAAAATCAGCTGACTGGTGTTATACCAAATGAACTCAGTAGCCTGAGTAACTTGACTAAACTTGATCTTTCAATCAACAGCCTCACGGGTCCTGTTCCATTCGGGTTTCAGTATATTCCTGCATTGATGTCATTGCAGCTTTTTGACAACAGTTTGAGTGGCAGCATTCCCCAAGGACTTGGACGTAATAGCCGACTTTGGGTGGTCGACTTTTCGGACAACCTCTTGACGGGACGAATACCTCCCCATCTATGCCGTCATTCTAACCTGATCATCTTGAACTTGGGGTCAAATAACCTTTATGGAAATATACCTACTGGGATCTTGAACTGCAAATCATTGTTGCAAATTCGTCTGGTTGGAAACAGGTTAACTGGCGGCTTTCCATTGGAGTTGTGTAACTTGATGAACCTTACTGCCATTGAATTGGACCAGAATAGATTCAGTGGTCCGCTTCCTCCAGAAATTAGGAATTGCCAGAAGTTGCAAAGGCTGCATATTGCGAACAATTACTTTACATCGAATTTGCCGAAGGAGATGGGAAACCTTGTGCAGTTGGCAACTTTCAACGCTTCGTCGAATCTTTTTATTGGGTCGATTCCACCCGAAATAGTCTACTGCAAGACTCTCCAACGGCTCGACCTCAGCCACAACAGCTTTGAAAATACTTTGCCAAAGGAGATTGGATCTCTTTTACAGTTGGAAATTCTTAGAGTTTCAGAAAATAAATTTTCGGGAAATATACCTGGAGAATTGAGAAACCTCTCTCATTTGACAGAATTGCAAATGGGTGGCAATTCATTCTCTGGTAGCATTCCTATGGAGTTGGGGTCTCTAAAAAGCTTGCAGATTGCTCTGAATCTCAGTTTCAATATGCTAACTGGGACAATACCACCAGAGCTTGGAAATCTGAATCTACTGGAATATCTCCTACTTAATAACAATCACTTGACTGGTGAAATACCTAGCTCCTTTGCCAATCTTTCAAGTTTAATGGGTTGCAACTTCTCCTACAATGACCTTCACGGGTCGATCCCTTCGATACCCTTGCTTCAGAACATGCCTATTAGTAGCTTCATTGGCAATAAGGGGCTCTGTGGTGGACCTCTTGGTGACTGCAATGGAGATTCACCATCTCCATCTATTCCATCTTTTGAGAGCGTGAATGCACCTCGAGGTAGAATCATTACTGGGATCGCTGCTGCCATCGGTGGAGTTTCTATTGTTCTAATCGTGATCATCTTATATTGCATGAGACATCCGCCTGACATGGTGCAAAACAAGGAAACACAATCTCTTGATTCGGACATCTACTTCCCTCCTAAGGAAGGTTTTACTCTCGAAGATCTAATTGAAGCCACAAATAGTTTTCATGAGAGCTGTGTGGTGGGAAAAGGTGCTTGTGGAACTGTCTACAAGGCAGTGATGCATTCTGGACAGACCATTGCCGTCAAGAAGTTAGCATCAAACAGGGAAGGGAGCAACGTCGAGAATAGTTTTCGGGCTGAGATTTCGACACTAGGAAAGATCAGACATCGCAATATTGTTAAACTATATGGCTATTGCTATCACCAGGGTTCGAATCTTCTTCTCTATGAGTTCATGGAAAGGGGCAGTTTGGGTGAGTTGCTTCATGGGACGACGTGTAACTTGGAATGGCCAACTCGGTTTACAATTGCCATTGGGGCTGCGGAGGGACTTGCTTATCTACACCATGGCTGCAAACCAAAGATCATACATCGTGATATCAAATCGAATAACATTCTCCTTGATTATAACTTTGAGGCGCATGTTGGTGATTTTGGTTTGGCTAAAGTGATGGACATGCCTCATTCTAAATCAATGTCAGCAGTCGCTGGATCGTATGGATACATCGCTCCTGAATATGCATACACCATGAAAGTCACAGAAAAATGTGACATATACAGCTATGGGGTAGTTTTACTTGAACTGCTAACTGGAAAAACTCCAGTACAGCCAATTGATCAGGGAGGCGATCTCGTCACATGGGTCAAAAACTATATGCGAGACCATTCGATGTCGTCTGGAATGCTAGACGAGCGACTAAATCTTCAAGACCAAGCCACGGTCGATCACATGCTAACAGTCCTAAAAATTGCAATAATGTGCACAAGTCTGTCTCCTTTTCAACGGCCATCGATGCGAGAAGTTGTATTGATGCTTTTAGAATCTACCGAGCCCGACGAAGATCATATTCCAGCTTTAACTTATAATCTAGCTCCAAAAGACGACGCAACCACGTGA 3327 42.44 MVVKMLYCWDFGLVLSAKFVGVIFLLLASLFNTSHGLNPEGYFLLELKNGLSDPDGSLRNWGSSDETPCGWTGVNCTSGMERVVYALDLNSKNLSGPLSSSIGNLIHLTYLNLSFNGFNGSIPKEIGNCMRLEYLSLENNKFDGELPSELGKLTSLVKLNICNNQIHGSFPEEIGNLESLFELVAYTNNITGPLPRSFGKLKNLRRFRAGQNAISGSLPAEIGQCENLEMLGLAQNQLEGELPKELGMIRNLTELVLWENQFSGILPKELGNCTRLTMLALYENNLGGPIPKEFGNLISLNKLYIYRNALNGTIPRELGNLSQAMEIDFSENYLTGEIPKEFSNIKGLQLLYLFQNQLTGVIPNELSSLSNLTKLDLSINSLTGPVPFGFQYIPALMSLQLFDNSLSGSIPQGLGRNSRLWVVDFSDNLLTGRIPPHLCRHSNLIILNLGSNNLYGNIPTGILNCKSLLQIRLVGNRLTGGFPLELCNLMNLTAIELDQNRFSGPLPPEIRNCQKLQRLHIANNYFTSNLPKEMGNLVQLATFNASSNLFIGSIPPEIVYCKTLQRLDLSHNSFENTLPKEIGSLLQLEILRVSENKFSGNIPGELRNLSHLTELQMGGNSFSGSIPMELGSLKSLQIALNLSFNMLTGTIPPELGNLNLLEYLLLNNNHLTGEIPSSFANLSSLMGCNFSYNDLHGSIPSIPLLQNMPISSFIGNKGLCGGPLGDCNGDSPSPSIPSFESVNAPRGRIITGIAAAIGGVSIVLIVIILYCMRHPPDMVQNKETQSLDSDIYFPPKEGFTLEDLIEATNSFHESCVVGKGACGTVYKAVMHSGQTIAVKKLASNREGSNVENSFRAEISTLGKIRHRNIVKLYGYCYHQGSNLLLYEFMERGSLGELLHGTTCNLEWPTRFTIAIGAAEGLAYLHHGCKPKIIHRDIKSNNILLDYNFEAHVGDFGLAKVMDMPHSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPIDQGGDLVTWVKNYMRDHSMSSGMLDERLNLQDQATVDHMLTVLKIAIMCTSLSPFQRPSMREVVLMLLESTEPDEDHIPALTYNLAPKDDATT 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 75444043 75448757 - Tan0001979.1 Tan06g2339 757043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2339 1108 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 416 731 - -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 604 727 IPR032675 -
Tan06g2339 1108 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 36 195 - -
Tan06g2339 1108 SUPERFAMILY Protein kinase-like (PK-like) 788 1082 IPR011009 -
Tan06g2339 1108 SUPERFAMILY RNI-like 87 430 - -
Tan06g2339 1108 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Tan06g2339 1108 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 776 888 - -
Tan06g2339 1108 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 889 1097 - -
Tan06g2339 1108 SMART serkin_6 811 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2339 1108 Pfam Protein kinase domain 812 1079 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2339 1108 Gene3D Phosphorylase Kinase; domain 1 776 888 - -
Tan06g2339 1108 ProSiteProfiles Protein kinase domain profile. 811 1083 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 509 603 IPR032675 -
Tan06g2339 1108 Pfam Leucine Rich Repeat 251 273 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 587 609 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 661 682 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 611 633 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 564 585 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 515 537 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 640 658 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515(InterPro)
Tan06g2339 1108 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 196 286 - -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 337 437 IPR032675 -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 153 241 IPR032675 -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 41 152 IPR032675 -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 438 508 IPR032675 -
Tan06g2339 1108 Gene3D Ribonuclease Inhibitor 242 336 IPR032675 -
Tan06g2339 1108 SUPERFAMILY L domain-like 390 723 - -
Tan06g2339 1108 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 289 393 - -
Tan06g2339 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g2339 1108 SMART LRR_typ_2 249 272 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 609 633 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 201 225 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 105 129 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 297 321 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 564 585 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 658 681 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 369 392 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 393 417 IPR003591 -
Tan06g2339 1108 SMART LRR_typ_2 153 177 IPR003591 -
Tan06g2339 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 629 1087 IPR050647 -
Tan06g2339 1108 Gene3D Transferase(Phosphotransferase) domain 1 889 1096 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0365 Tan-Chr3:52003283 Tan06g2339 Tan-Chr6:75444043 7.30E-60 dispersed
Tan06g2339 Tan-Chr6:75444043 Tan10g0587 Tan-Chr10:4804766 7.50E-22 dispersed
Tan06g2339 Tan-Chr6:75444043 Tan03g1728 Tan-Chr3:73213135 7.40E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67811 PF00069 Pkinase 1.80E-48 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2339 K27590 - csv:101221337 1891.7