Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2340 ATGGAGTCTTCTTTGGCTTTCATGGATGACCTTCTGGATTTCTCTTCGGATATCGGTGAGGAAGACGAAGAAGACGACGTCGTTCCACCCAAATCTTCAACGGCGGCGGCGGCGGACTCGTCGGAGTTGAACGCCGGTTTCCACCCGGACGATTCTTCTTCTTGCCCTATTTTGCCTGAGGATTATGCAGAGGAAGAACTCGAGTGGCTATCGAACGAAGATGCATTTCCGGCCGTCGAGACATTCGTCGACATTCTCTCCGACCACCACCACCCACCGCCGACGCCGCCGTTGACGACCGTCTCGAAGCAGAACAGTCCGGTTTCGGTCCTCGAAAGCGCTTCCATCAGCAGCCATGGTGAAACCAACAACAGTAGTAAGTCGAGCAGCCATGGTAGCATTCTGATGAGTTGCTGCGGCGGTCTGAAAGTCCCCGGGAAGGCTCGGAGCAAGCGCCGCCGTAGCCGGCACATCTCCGGCCACCATCTCTGGTTCAAGCAGCAACCCAGTTCGAGGAATGTAAAACAAGTACTACCCACCACCACGACGGCGGTGACCACGGCGGCGATAGGGAGAAAATGCCTACATTGTGGAGCGGAGAAAACGCCGCAATGGCGAGCGGGGCCATTAGGGCCGAAAACGCTGTGTAATGCTTGTGGGGTTAGGTTCAAATCGGGGAGGCTGGTGCCGGAGTACCGGCCGGCGAGTAGTCCGACGTTTTCGCCGGAGCTGCACTCGAATTCTCACCGGAAAGTGGTGGAGATGAGGAGACAGAAGCAGTTAGGTATGGTGGTGAATCCAATGGATAAAGGGTAA 816 56.13 MESSLAFMDDLLDFSSDIGEEDEEDDVVPPKSSTAAAADSSELNAGFHPDDSSSCPILPEDYAEEELEWLSNEDAFPAVETFVDILSDHHHPPPTPPLTTVSKQNSPVSVLESASISSHGETNNSSKSSSHGSILMSCCGGLKVPGKARSKRRRSRHISGHHLWFKQQPSSRNVKQVLPTTTTAVTTAAIGRKCLHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFSPELHSNSHRKVVEMRRQKQLGMVVNPMDKG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 75462161 75464913 - Tan0014162.1 Tan06g2340 757044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2340 271 CDD ZnF_GATA 193 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 PANTHER GATA TRANSCRIPTION FACTOR 8 260 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan06g2340 271 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 Pfam GATA zinc finger 194 228 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 SMART GATA_3 188 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 FunFam GATA transcription factor 184 269 - -
Tan06g2340 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 250 - -
Tan06g2340 271 Gene3D - 188 239 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan06g2340 271 MobiDBLite consensus disorder prediction 1 57 - -
Tan06g2340 271 MobiDBLite consensus disorder prediction 101 132 - -
Tan06g2340 271 MobiDBLite consensus disorder prediction 86 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2340 Tan-Chr6:75462161 Tan11g0865 Tan-Chr11:7063307 1.50E-29 dispersed
Tan06g2340 Tan-Chr6:75462161 Tan04g2676 Tan-Chr4:86143676 7.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27827 PF00320 GATA 8.20E-16 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2340 - - - 0.0