Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2340 ATGGAGTCTTCTTTGGCTTTCATGGATGACCTTCTGGATTTCTCTTCGGATATCGGTGAGGAAGACGAAGAAGACGACGTCGTTCCACCCAAATCTTCAACGGCGGCGGCGGCGGACTCGTCGGAGTTGAACGCCGGTTTCCACCCGGACGATTCTTCTTCTTGCCCTATTTTGCCTGAGGATTATGCAGAGGAAGAACTCGAGTGGCTATCGAACGAAGATGCATTTCCGGCCGTCGAGACATTCGTCGACATTCTCTCCGACCACCACCACCCACCGCCGACGCCGCCGTTGACGACCGTCTCGAAGCAGAACAGTCCGGTTTCGGTCCTCGAAAGCGCTTCCATCAGCAGCCATGGTGAAACCAACAACAGTAGTAAGTCGAGCAGCCATGGTAGCATTCTGATGAGTTGCTGCGGCGGTCTGAAAGTCCCCGGGAAGGCTCGGAGCAAGCGCCGCCGTAGCCGGCACATCTCCGGCCACCATCTCTGGTTCAAGCAGCAACCCAGTTCGAGGAATGTAAAACAAGTACTACCCACCACCACGACGGCGGTGACCACGGCGGCGATAGGGAGAAAATGCCTACATTGTGGAGCGGAGAAAACGCCGCAATGGCGAGCGGGGCCATTAGGGCCGAAAACGCTGTGTAATGCTTGTGGGGTTAGGTTCAAATCGGGGAGGCTGGTGCCGGAGTACCGGCCGGCGAGTAGTCCGACGTTTTCGCCGGAGCTGCACTCGAATTCTCACCGGAAAGTGGTGGAGATGAGGAGACAGAAGCAGTTAGGTATGGTGGTGAATCCAATGGATAAAGGGTAA 816 56.13 MESSLAFMDDLLDFSSDIGEEDEEDDVVPPKSSTAAAADSSELNAGFHPDDSSSCPILPEDYAEEELEWLSNEDAFPAVETFVDILSDHHHPPPTPPLTTVSKQNSPVSVLESASISSHGETNNSSKSSSHGSILMSCCGGLKVPGKARSKRRRSRHISGHHLWFKQQPSSRNVKQVLPTTTTAVTTAAIGRKCLHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFSPELHSNSHRKVVEMRRQKQLGMVVNPMDKG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 75462161 75464913 - Tan0014162.1 Tan06g2340 757044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2340 271 CDD ZnF_GATA 193 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 PANTHER GATA TRANSCRIPTION FACTOR 8 260 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan06g2340 271 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 Pfam GATA zinc finger 194 228 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 SMART GATA_3 188 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2340 271 FunFam GATA transcription factor 184 269 - -
Tan06g2340 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 250 - -
Tan06g2340 271 Gene3D - 188 239 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan06g2340 271 MobiDBLite consensus disorder prediction 1 57 - -
Tan06g2340 271 MobiDBLite consensus disorder prediction 101 132 - -
Tan06g2340 271 MobiDBLite consensus disorder prediction 86 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2340 Tan-Chr6:75462161 Tan11g0865 Tan-Chr11:7063307 1.50E-29 dispersed
Tan06g2340 Tan-Chr6:75462161 Tan04g2676 Tan-Chr4:86143676 7.20E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008616 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27827 PF00320 GATA 8.20E-16 CL0167 Tan TF