Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2341 ATGCCACACCCACATGTAAATAATCCTACGCTCTGTTTCTCTCAACAGAGACACTTTCTTCCTCTGTTTTCAACAATGGCGGCTTCAAATTGCTCACTGACTCTGGCCCAGCTCCTCGGCCCTAATGTTACCAACTCCGGCGCCGCCGCCTCCTTTATCTGCGACCAATTCTCCACCTCCACCACCAACTTTTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGTTTCGCCATGCTCTGCGCCGGCTCCGTCCGGGCTAAAAACACTATGAACATCATGCTCACCAACGTCCTCGATGCCGCTGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTTGCCTTCGCCTTCGGCACCCCCTCTAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCAATCCCCACCGGCTCCACCCCCACCCCCACCGATTATAGCTTCTTCCTCTACCAATGGGCTTTCGCTATCGCCGCCGCCGGCATCACCAGCGGTTCAATTGCCGAGCGGACCCAATTCGTCGCCTATTTGATCTACTCCTCTGTTTTGACCGGTTTTGTCTACCCGGTTGTATCCCACTGGTTCTGGTCCCCGGACGGTTGGGCCAGCCCGTCCCGGTCCAATGGCGATCTTTTATTCGGAACCGGAGTCATCGATTTTGCCGGTTCAGGCGTGGTTCACATGGTTGGTGGAATCGCTGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGCCGGTTCGACAGAACCGGCCGATCCGTTGCACTACGAGGCCACAGCGCTTCGTTAGTAGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACGAAAATCCTAGTCCCGTACGGTGTGGGTAATTTCTACGGACAGTGGAGCGCCGTCGGCCGGACCGCCGTGACAACCACGCTCGCCGGTTGCACGGCGGCGCTGACTACCCTTTTCGGAAAACGGATTCTCTCCGGCCACTGGAACGTCACCGACGTCTGCAACGGATTACTCGGCGGCTTCGCCGCCATTACCTCCGGCTGCTCAGTGGTGGAGCCGTGGGCGGCGGTGATATGTGGGTTTGTGGCGGCGTTGGTGTTAATCAGCTGCAACAAACTGGCGGAGAAGGTGAAATTCGACGACCCATTGGAGGCAGCGCAACTGCACGGCGGGTGCGGCGCGTGGGGGATAATTTTCACGGCGTTGTTCGCGACGAAGGAGTATGTGAACGAGGTGTACGGCGGAGAGATAGGGCGGCCGCACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGCTGGCGGCGCATGTGATACAGATTCTGGTGATTATTGGATGGGTTAGCGTCACAATGGGACCGTTGTTTTTTGGGCTTCATAAACTGAAGCTACTGAGAATATCGCCGGAGGATGAGATGGCCGGAATGGATATGACGAGGCACGGCGGATTTGCTTACGTGTACCATGATGAAGATGAGTCACCGGCGAATGGGGTCCAAATGAGGAAGATTAAGCCAGGGGAAACGAGTCCAATTGGAAATTAG 1590 56.42 MPHPHVNNPTLCFSQQRHFLPLFSTMAASNCSLTLAQLLGPNVTNSGAAASFICDQFSTSTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNAFIGRHFFGLKSIPTGSTPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYGVGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKEYVNEVYGGEIGRPHGLFMGGGGKLLAAHVIQILVIIGWVSVTMGPLFFGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPANGVQMRKIKPGETSPIGN 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 75480335 75482893 + Tan0013986.1 Tan06g2341 757045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2341 529 Pfam Ammonium Transporter Family 75 501 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan06g2341 529 PANTHER AMMONIUM TRANSPORTER 45 508 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Tan06g2341 529 FunFam Ammonium transporter 53 516 - -
Tan06g2341 529 ProSitePatterns Ammonium transporters signature. 232 257 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan06g2341 529 Gene3D Ammonium transporter AmtB like domains 51 520 IPR029020 -
Tan06g2341 529 SUPERFAMILY Ammonium transporter 71 482 - -
Tan06g2341 529 NCBIfam ammonium transporter 72 501 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2341 Tan-Chr6:75480335 Tan10g0608 Tan-Chr10:4967294 1.70E-237 dispersed
Tan08g1053 Tan-Chr8:18443531 Tan06g2341 Tan-Chr6:75480335 7.10E-209 transposed
Tan06g2341 Tan-Chr6:75480335 Tan07g2156 Tan-Chr7:73198943 6.90E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2341 K03320 - csv:101212168 926.006