Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2418 ATGAATTCTTCATTCTTTCAATCCCAAAACTCCGATTTCTCGCCGGAATCTTCCTTCAGCTCCTTCGAATCTCTCCGATGGGAAGGTTTTCAAATCAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTGATCTCAGAGGCCGCCGTGTACCCATCGGAGAATTCTCTCCGGAAGGCTCCGATCAAGGACGAGGAGGTCGATTCGCTCGGAGAAGAAGAACCCCACAAGCGAAAATCCTACAGAGGAGTCCGCCGGCGGCCGTGGGGGAAATTCGCAGCGGAGATACGGGACTCGACCCGGCATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCCGCTTTGGCCTACGATCAAGCCGCTTTCTCGATGCGGGGCGCCTCGGCTGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCAGACGGCGGTGACGGCGACGGCGATGGCGGATCTCCGGTGGTGGCTTTGAAGAGAAAACATTCCATGAGGAAGAAATTCACGAGGAGAAAGAGCAAAGAGAGAGATGAAATTGGGAAAATGGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGCCCGGATTATTTGGAAGAACTTTTGGGGTCGTCGGAGAATCTCCGGCCATGGTGA 699 53.79 MNSSFFQSQNSDFSPESSFSSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPSENSLRKAPIKDEEVDSLGEEEPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGASAVLNFPVERVQESLKEMEMINSAADGGDGDGDGGSPVVALKRKHSMRKKFTRRKSKERDEIGKMESNVVVLEDLGPDYLEELLGSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 76662959 76664040 - Tan0004792.1 Tan06g2418 757122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2418 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Tan06g2418 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Tan06g2418 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 PANTHER DNA-BINDING DOMAIN 43 189 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan06g2418 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2418 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2540 Tan-Chr3:78651979 Tan06g2418 Tan-Chr6:76662959 9.00E-26 dispersed
Tan03g2541 Tan-Chr3:78653001 Tan06g2418 Tan-Chr6:76662959 2.50E-25 dispersed
Tan06g2418 Tan-Chr6:76662959 Tan07g1882 Tan-Chr7:70388393 6.60E-21 dispersed
Tan06g2418 Tan-Chr6:76662959 Tan06g2419 Tan-Chr6:76711599 1.50E-20 tandem
Tan10g0689 Tan-Chr10:5627998 Tan06g2418 Tan-Chr6:76662959 2.00E-67 wgd
Tan06g2418 Tan-Chr6:76662959 Tan07g2222 Tan-Chr7:73655817 4.40E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27833 PF00847 AP2 1.10E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2418 K14516 - csv:101206564 366.311