Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2437 ATGGATCGGGTGGGCTTTCCGGCCACCGACCCGACAGAAACCGCCGTCAACGGCCACGGAAGAGATCATGATGACGACGAGGACGAGCAGAAGGAAGGCGGCGTGGTGGTCGGAAATCGCCGATCGAGAGGGCGACCACCGGGATCCAAAAACAAACCGAAATCCCCAATCATCGTCACGCGCGACAGTCCTCACGCGCTTCGCACGCACGTCATAGAGATCGCCGGAGGAGCCGACGTCGCCGACAGCATAAACCAATTCTCTCGCCGCCGGCAGCGTGGGATTTGCGTTCTCAGCGGCAGTGGCACGGTGGCCGACGTCACTCTCCGGCAATCCGCTGCTTCCGCCGCCGTGATTCCACTTCACGGCCGGTTCGAGATTCTGTCTCTGTCAGGTTCTTTTCTTCCCGGTCTAGCCCCTCCCGGTTCGACCGGGCTGACCGTGTACCTCGCCGGCGGGGAGGGGCAGGTGGTCGGAGGGACGGTGGTGGGCCCACTGTTGGCGGCTGGGCCTGTAGTGTTGATAGCTGCTACTTTTGCTAATGCAACATATGAGAGATTGCCTTTAGAAGACGACCATAATTTTCAAGAAAGAGAGTTTTCTCCGGCCGCCACAGGCAGCGGAGAAGTGAAGGCGCCGCCGCCGCAGCCGTGTCCTCCGACGACAGCTTCAATTTATGAGATGATGATACCAAATAATCATCATGAGATTGGGGGACACATGCTTGGGCTCATGGGAGACCACCTTGTTTAA 753 58.83 MDRVGFPATDPTETAVNGHGRDHDDDEDEQKEGGVVVGNRRSRGRPPGSKNKPKSPIIVTRDSPHALRTHVIEIAGGADVADSINQFSRRRQRGICVLSGSGTVADVTLRQSAASAAVIPLHGRFEILSLSGSFLPGLAPPGSTGLTVYLAGGEGQVVGGTVVGPLLAAGPVVLIAATFANATYERLPLEDDHNFQEREFSPAATGSGEVKAPPPQPCPPTTASIYEMMIPNNHHEIGGHMLGLMGDHLV 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 76823675 76825082 + Tan0015296.1 Tan06g2437 757141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2437 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 180 IPR005175 -
Tan06g2437 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 203 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan06g2437 250 CDD DUF296 68 151 IPR005175 -
Tan06g2437 250 MobiDBLite consensus disorder prediction 16 38 - -
Tan06g2437 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 192 - -
Tan06g2437 250 Gene3D - 67 198 - -
Tan06g2437 250 MobiDBLite consensus disorder prediction 1 62 - -
Tan06g2437 250 FunFam AT-hook motif nuclear-localized protein 67 194 - -
Tan06g2437 250 ProSiteProfiles PPC domain profile profile. 64 201 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2437 Tan-Chr6:76823675 Tan08g0388 Tan-Chr8:3505718 2.80E-65 dispersed
Tan10g0717 Tan-Chr10:5902568 Tan06g2437 Tan-Chr6:76823675 3.80E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2437 - - - 0.0