Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2463 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGATGGCGTTGACTGGGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATTCAATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGCCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATGTCTTCCAGGAAATTCAAGGAGAAGGGAAAGAGTATCAGGGTGGGCTACAGGATGGTGAAGCTGAAGAAGATGAATCCCCATTTGAATTCCGTGCCCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCCGCACGGACAACTGAACTGGAGACTGCTGCTTATCCAGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAATTTGGACAGAGTTCGTAAATTGAAGTGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGACGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGAGCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCGAGTATTGCAACACGTGGGGATGAGAATGACATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGACGGTACATTGAACAAATTAACTACGCTGCGAGAATATATTGATGACACAGAAGATTATATCAATATCCAGCTCGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACAGTTTGTATGTCTATCTATTCTTTGGTGAGTGCAATATTTGGCATGAACATTCCATACACTTGGAACGACGATCACGGATACATGTTTAAATGGGTTGTCATTATTTCTGGAGTAGGTTGCGCTATGCTGTTCATCGCAATTGTTTGCTATGCTCGCCTCAAAGGTTTGGTAGGGTCTTGA 1176 44.81 MARDGHVVPVDPQMALTGKKKKQSSRNWILLDCTGQGTVLDVDKYSIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNVFQEIQGEGKEYQGGLQDGEAEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKCAMTRLTARVQKVRDELEQLLDDDDDMAELYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASIATRGDENDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIISGVGCAMLFIAIVCYARLKGLVGS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 77240801 77247719 - Tan0001266.1 Tan06g2463 757167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2463 391 Gene3D - 14 99 - -
Tan06g2463 391 FunFam Magnesium transporter MRS2-1 16 99 - -
Tan06g2463 391 CDD Mrs2_Mfm1p-like 28 388 IPR039204 -
Tan06g2463 391 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 18 387 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Tan06g2463 391 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 327 378 IPR045863 -
Tan06g2463 391 Coils Coil 193 220 - -
Tan06g2463 391 Pfam Magnesium transporter MRS2-like 271 318 - -
Tan06g2463 391 Pfam Magnesium transporter MRS2-like 40 235 - -
Tan06g2463 391 Gene3D Magnesium transport protein CorA, transmembrane region 105 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2463 K16075 - - csv:101203841 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0792 Tan-Chr1:7556071 Tan06g2463 Tan-Chr6:77240801 1.60E-87 dispersed
Tan01g0793 Tan-Chr1:7556071 Tan06g2463 Tan-Chr6:77240801 1.60E-87 dispersed
Tan06g2463 Tan-Chr6:77240801 Tan07g2271 Tan-Chr7:74051858 8.00E-120 dispersed
Tan02g1037 Tan-Chr2:15647461 Tan06g2463 Tan-Chr6:77240801 1.30E-77 transposed
Tan04g2493 Tan-Chr4:83806570 Tan06g2463 Tan-Chr6:77240801 6.40E-89 transposed
Tan06g2463 Tan-Chr6:77240801 Tan07g2269 Tan-Chr7:74051858 8.80E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2493 . 1 447 MRS2 Gene Family AT1G16010 84.1 4.1e-205 711.4
Tan02g2275 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G16010 54.5 7.5e-82 302.0
Tan07g2270 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan07g2271 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan06g2463 . 1 364 MRS2 Gene Family AT5G64560 80.2 1.8e-156 549.7
Tan07g2269 . 1 367 MRS2 Gene Family AT5G64560 70.3 1.2e-133 473.8
Tan07g2271 . 1 327 MRS2 Gene Family AT5G64560 69.8 7.5e-115 411.4
Tan07g2270 . 1 326 MRS2 Gene Family AT5G64560 70.0 9.8e-115 411.0
Tan02g1037 . 14 495 MRS2 Gene Family AT3G19640 64.0 1.6e-154 543.5
Tan01g0792 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan01g0793 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan02g2275 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2276 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2277 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan04g2493 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.7e-112 403.7
Tan02g2278 . 6 285 MRS2 Gene Family AT2G03620 67.7 7.9e-97 351.7
Tan01g0792 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan01g0793 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan06g2463 . 1 326 MRS2 Gene Family AT5G09690 74.8 2.3e-125 446.0
Tan07g2269 . 1 329 MRS2 Gene Family AT5G09690 66.3 1.1e-111 400.6
Tan07g2270 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan07g2271 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan04g2493 . 40 383 MRS2 Gene Family AT5G09690 50.9 9.6e-79 291.2
Tan06g2463 . 23 286 MRS2 Gene Family AT5G09720 67.5 7.2e-89 324.7
Tan07g2269 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2270 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2271 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan04g2493 . 1 447 MRS2 Gene Family AT1G80900 82.8 6.8e-200 694.1
Tan02g2275 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G80900 54.5 1.3e-78 291.2
Tan07g2270 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan07g2271 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan08g1157 . 18 439 MRS2 Gene Family AT5G22830 66.7 2.2e-148 523.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58