Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2471 ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCACCGCCGCCCACCGGCGCCACCCTCCTCGGCAAGTACCAGTTAGGCCGATTCCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCCCGTTCTCTCACCGATAACTCTGTCGTCGCCGTTAAAATCATCGACAAGAACAAAACCATCCACGCCGCCATGGAGCCTTGCATTGTCCGTGAGATTGCCGTGATGCGCCGCCTTCAGCACCATCCGAACATCCTCAAAATCCACGAAGTCATGGCGACGAAGACGAAAATCTATCTCGTCGTAGATTACGCCTCCGGCGGTGAGCTCTTCGCAAAACTCCTCCGCCGTGGCCGGCTGACGGAATCCTCCGCTCGCCGATACTTTCAACAACTCGTCTCTGCTCTCCACTTCTGTCACCAAAACGGCGTCGCTCATCGCGACATCAAGCCCCAAAATCTCCTTCTCGACGAAGACGGTAACCTAAAGGTCTCCGACTTCGGTCTCTCGGCGTTACCAGAGCAGATCAAAGACGGAATGCTCCACACAGCGTGCGGAACTCCAGCCTACACCGCGCCGGAGGTAGTTTCCCGGCGAGGCTACGACGGCGCAAAGGCCGACGCGTGGTCTTGCGGCGTTATACTCTTCGTCTTACTCTCCGGCCACCTCCCATTCAGCGACAACAATCTGGTGGCCATGTTCAAGAAGGTTTATCGACGGGAATATCAATTCCCCGATTCGATTTCGAAGCCGGCAAGGCATTTGATCTTCCAACTGCTCGATCCAAATCCGAACACGAGGATGAGCATTGAGGCATTGATGCAACATTCGTGGTACAAGAAATCGTTGCGATCGAAGCCACAAATCAACAACAGGAGCTTGTTTGAATCGTTAGGTAATTACAAATCTGAATTGGGTGTTTCTGGATTGAATGCTTTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCGGGGCTGTTTGAGACAACGGATTGTAAGAAGAAGAGGTTCACGACGGGGGTGAGTTTGGAGAAGGTGGAAGAGAGAGTAACAGAGATTGGTGGGGAATTGGGTTACAGAGTGGAGAAAGGGAAGAGTGGAGCAATTGGGTTGGGGAAAGGGAGGATGATTTTGGTGGTGGAGCTTTTGGAAATCACTTCCAATCTGTTAATGGTGGAAGTCAAGGTAGCTGAATCCAAAATGGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGTTTCGTGGCACACCAATGAGGCAATGTGA 1293 52.51 MEPGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLTDNSVVAVKIIDKNKTIHAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESSARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMFKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQINNRSLFESLGNYKSELGVSGLNAFDIISMSSGLDLSGLFETTDCKKKRFTTGVSLEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVELLEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVVSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 77368857 77370652 - Tan0012070.1 Tan06g2471 757175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2471 430 Gene3D Kinase associated domain 1, KA1 309 423 - -
Tan06g2471 430 FunFam Non-specific serine/threonine protein kinase 16 304 - -
Tan06g2471 430 Gene3D Transferase(Phosphotransferase) domain 1 17 308 - -
Tan06g2471 430 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Tan06g2471 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2471 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Tan06g2471 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g2471 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2471 430 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2471 430 SUPERFAMILY Protein kinase-like (PK-like) 22 287 IPR011009 -
Tan06g2471 430 CDD CIPK_C 312 414 - -
Tan06g2471 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Tan06g2471 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan06g2471 430 FunFam Non-specific serine/threonine protein kinase 18 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2471 Tan-Chr6:77368857 Tan08g0370 Tan-Chr8:3345695 7.00E-101 dispersed
Tan06g0847 Tan-Chr6:7009286 Tan06g2471 Tan-Chr6:77368857 1.40E-12 transposed
Tan10g0764 Tan-Chr10:6327613 Tan06g2471 Tan-Chr6:77368857 3.30E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67816 PF00069 Pkinase 1.00E-72 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2471 K12761 - csv:101215156 801.201