Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2474 ATGGCACAATCTCTGCAACTTTTCACCTCCTCCACCTCCCGCTCTCCGCCCATTTCTCTCCCCAAACATTCCATCTCAAAACCCCCCTCCCCTTCCACCGCCGCCTTCCGCTTCCCCTTCTCCTTCCCCAAATCGTCAATTACAGCCTCTTCCTCTCCGGATCTCAATCCCCTCTCCTCGGCCTCCACTTCCCAAGTCCTTGTTTCTGAAAATGGCTCGAGTTCCGGTGGTGGGGTTGTTTCTACTTCTGCTACTACTAGGGAATTTGTGCCTGTTGTGTCTGATGCCAGCTCGATTGAGGTCGATGCTGTCACCGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACGAGGAGGACGAAGCTTGTGTGTACTATTGGTCCTGCTACTTGCGGTTTTGAGCAGCTTGAGGCGCTTGCTGTTGGCGGTATGAATGTTGCGAGGATCAATATGTGTCATGGGACTCGAGAGTGGCATCGGGCGGTCATTGAACGCGTGCGGAGGCTTAATGAGGAGAAGGGTTATGCTGTGGCAATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGTGATCTTGGTGGAGCTTCTTCTGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACCATTAACGTGAACTATGAAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAGCTTGGTCCTGATGTTAAGTGTCTGTGTACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTCGACTTCCTTGCCATATCATTTGTCAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCGATCATCGCAAAGATAGAGAGTCTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCAGTTAAATAAACCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCGATGATCGAATACCCTACTCCCACCAGAGCTGAAGTTGCTGATGTTTCTGAGGCCGTTAGGCAGCGAGCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTACCCCGAGAAGGCATTGACTGTTCTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAAGCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCCAAAATGGCCAATAATTTGGAGGTGGATGCAATTTTCGTCTACACAAAGACAGGCCACATGGCATCTCTCCTGTCCCGTTGCCGACCCGATTGCCCGATCTTTGCGTTTACTTCCACGACTTCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGCTTGAGCTTCTCGGACGACATGGAAAACAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGACATGTTGCAGTCTATCCAAGTAATGAATGTTCCATAA 1794 47.71 MAQSLQLFTSSTSRSPPISLPKHSISKPPSPSTAAFRFPFSFPKSSITASSSPDLNPLSSASTSQVLVSENGSSSGGGVVSTSATTREFVPVVSDASSIEVDAVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRAVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKLGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQYPEKALTVLRSVSLRIEKWWRDEKRHEAMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 77433127 77437854 - Tan0009501.1 Tan06g2474 757178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2474 597 MobiDBLite consensus disorder prediction 1 31 - -
Tan06g2474 597 FunFam Pyruvate kinase 293 460 - -
Tan06g2474 597 FunFam Pyruvate kinase 461 587 - -
Tan06g2474 597 PRINTS Pyruvate kinase family signature 342 368 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 438 454 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 369 393 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 310 324 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 419 437 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 175 191 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 PRINTS Pyruvate kinase family signature 394 418 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 SUPERFAMILY PK C-terminal domain-like 449 595 IPR036918 -
Tan06g2474 597 Pfam Pyruvate kinase, barrel domain 118 449 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 104 464 IPR015813 GO:0003824(InterPro)
Tan06g2474 597 ProSitePatterns Pyruvate kinase active site signature. 340 352 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Tan06g2474 597 FunFam Pyruvate kinase 186 292 - -
Tan06g2474 597 Gene3D - 461 587 IPR036918 -
Tan06g2474 597 Pfam Pyruvate kinase, alpha/beta domain 488 587 IPR015795 -
Tan06g2474 597 Gene3D - 118 460 IPR040442 -
Tan06g2474 597 MobiDBLite consensus disorder prediction 1 32 - -
Tan06g2474 597 NCBIfam pyruvate kinase 118 586 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Tan06g2474 597 Gene3D - 186 292 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Tan06g2474 597 PANTHER PYRUVATE KINASE 94 587 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Tan06g2474 597 SUPERFAMILY PK beta-barrel domain-like 187 278 IPR011037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2474 K00873 - - csv:101218017 1065.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0602 Tan-Chr1:5518187 Tan06g2474 Tan-Chr6:77433127 2.70E-164 dispersed
Tan06g2474 Tan-Chr6:77433127 Tan07g1945 Tan-Chr7:71148893 6.30E-100 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38