Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan06g2483 | ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTTGATAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAGTCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTCGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACTTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTCGCTGCTAGTCCAATTCATTTCCCTCAGAATCTCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGAATGCCAACGAGAGAGAAGACTTTTTTCCTCCTAGTGCTACTATCTATCGAAATGTGCATACAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAGGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA | 1008 | 46.73 | MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNLPLGGTAACQSPPCLLQNANEREDFFPPSATIYRNVHTEKMVEYPQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTGSLSPTGVAKAFVGTADNQPKLACFPVDLNVKDIQEC | 335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 77544765 | 77549936 | - | Tan0014723.1 | Tan06g2483 | 757187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan06g2483 | 335 | Pfam | Jas motif | 244 | 260 | IPR018467 | - | |
| Tan06g2483 | 335 | ProSiteProfiles | Tify domain profile. | 138 | 173 | IPR010399 | - | |
| Tan06g2483 | 335 | PANTHER | PROTEIN TIFY 4A-RELATED-RELATED | 20 | 260 | IPR040390 | GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER) | |
| Tan06g2483 | 335 | MobiDBLite | consensus disorder prediction | 225 | 247 | - | - | |
| Tan06g2483 | 335 | MobiDBLite | consensus disorder prediction | 109 | 138 | - | - | |
| Tan06g2483 | 335 | Pfam | tify domain | 144 | 172 | IPR010399 | - | |
| Tan06g2483 | 335 | SMART | tify_2 | 138 | 173 | IPR010399 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g3185 | Tan-Chr5:83884311 | Tan06g2483 | Tan-Chr6:77544765 | 3.10E-109 | dispersed | |
| Tan06g2483 | Tan-Chr6:77544765 | Tan06g2485 | Tan-Chr6:77544765 | 2.00E-135 | dispersed | |
| Tan06g2483 | Tan-Chr6:77544765 | Tan06g2484 | Tan-Chr6:77544765 | 3.00E-147 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27841 | PF06200 | tify | 3.00E-15 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan06g2483 | - | - | - | 0.0 |