Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2485 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTTGATAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAGTCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTCGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACTTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTCGCTGCTAGTCCAATTCATTTCCCTCAGAATCTCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGAATGCCAACGAGAGAGAAGACTTTTTTCCTCCTAGTGCTACTATCTATCGAAATGTGCATACAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGGTAAGCGTTCTGTTTGCTTGCAATTTTGTAAATTGCTTGTGAAAAGAGAAACTCTGCATTTCTCATGTTTGCTGGAAACGTACATAACTCTGTTCTTTGTCCCAGTAATTTTGAATCTGCTTTTATGCCCTTGGACAAATTTTGTTGTGATAATTTGTATAAATGTACAACTACAAGCTTTGTGCTCCCAACCCAACTACCTTTTCCTCGATAAATCAATTTCAACCCTTATAGTATTGTCTTGA 960 45.1 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNLPLGGTAACQSPPCLLQNANEREDFFPPSATIYRNVHTEKMVEYPQQQHVKGTSTRDSGKRSVCLQFCKLLVKRETLHFSCLLETYITLFFVPVILNLLLCPWTNFVVIICINVQLQALCSQPNYLFLDKSISTLIVLS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 77544765 77549936 - Tan0014723.3 Tan06g2485 757189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2485 319 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 194 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Tan06g2485 319 Pfam tify domain 144 172 IPR010399 -
Tan06g2485 319 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Tan06g2485 319 SMART tify_2 138 173 IPR010399 -
Tan06g2485 319 MobiDBLite consensus disorder prediction 109 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2485 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2483 Tan-Chr6:77544765 Tan06g2485 Tan-Chr6:77544765 2.00E-135 dispersed
Tan06g2484 Tan-Chr6:77544765 Tan06g2485 Tan-Chr6:77544765 1.60E-135 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27843 PF06200 tify 2.80E-15 No_clan Tan TF