Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2525 ATGGTAAAACTTAAACCCTCCAAACTCATCTTCTTCTTCCTCCTCACTTCCCTTCTCTTCTCTTCCGTCGCCGTCCACCGCCACCCTCTCGACTCGCTCTCCCCGGCGGAGTTCGAACTCATCCGATCACTCATCACCAACACCACCGGCACCAACATCACCTTCCAATACGTCGCCGTCGCCGACCCCGACAAGCAATCCCTCCTCTCATGGCTCTCAAATCCCAAAACTCCACCGCCGCCCCGTCGCGCCATCGCCACCGTCCGGTTCAACAAAGCCACCCACGAGATCCTCATAGACATAACCCAAAACTCCATCCTCTCGAACCGCGTCTACTCCGGTCCGGCCTACGCGCCATACACATTCGAGGAGCAGTTCGCCGCCGCCGCGCTACCTCTATCCCACCGGCCGTTCGAGGCGGCGGTGAAAAAGAGAGGCCTGAAAATGGAAGAAGTGGTTTGCGCTTGTTTCAGCGTTGGATGGTTCGGGGAAAAGAAGAAAGAAAAGAGGATCGTGAAGGTTCAATGCTACTATTTGGATGGGAGTGTGAATTTGTACATGAGGCCGGTGGAAGGCGTGACGGTGACCGTCGATCTTGATGAGATGAAGATTATTGGATTTCGAGATAGATATGTGGTTCCGATGCCGAAGGCCGGTGGGACTGAGTACAGAGAATCAATGCTCAGGCCGCCGTTTTTGCCGCGTTTGAATGGAATCAAGCTGGTCCAGCCGGAAGGCCCCAGCTTCAAAGTCAACGGTCACTCCATTACTTGGGCGAACTGGAACTTCCACCTGAGCTTCGACGAGCGAGCGGGGCCAATCATATCGGTAGCATCAATCTACGACATGGAAAAGAAAAAGCACCGACAAGTATTATACAGAGCCTTCATATCGGAGTTGTTCGTGCCATACATGGACTTGAACGAAGAATGGTACTACCGAACGTTTTTCGACGCCGGCGAGTACGGGTTCGGGCAGTGCGCTGTGTCCTTAGAGCCGCTCAGAGATTGCCCGGAGAATGCGGTGTTTATGGATACGTACATGGCGGCCGGAGATGGGAGGCCGGTGAAGATGGCAAATACTTTCTGTATATTTGAACGCCTTGACGGTGATATCATGTGGCGCCACACGGAGGGCACTATTCCAAATAGATTAATTAGAGAATCGAGGGCGGAAGTGAGCTTGGTGGTGAGAATGGTGGCAGCTGTGGGCAACTATGACTATATTGTTGATTGGGAATTCAAACAGAGTGGCTCCATTATTGCTAATGTTGGGCTAACCGGGTTGCTAGAAGTTAGGGCATCAAAATACACTCACAGTGACCAAATAAAGGAGGAAGTCTACGGCCCTCTGTTAGCCGAGAATACGATCGGCGTCCGCCATGACCATTTCCTCATCTACCACCTCGATCTCGACGTCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGATCGCCGGACCCCGATTTCCCCAGGCGGAGCTATTGGACGGTCGTCGCCGAGACCGCAAAAACAGAGTCCGATGCGAGGATCAAATTCGGCCTCCAACAGGCCGAGTTCGCAATCGTGAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTTGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCTCTTTTGAGTTTGGATGATTACCCCCAAATTAGGGGAGCGTTTTCGAATTTCAATGTGTGGATTACACCGTATAATAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACTTTGGCTACTTGGAGTCACAGGGACAGGGAGATAGAGAATAAGGACATAGTGATGTGGTACACCATGGGTTTTCATCATGTACCTTGTCAAGAGGATTTCCCATTGATGCCAACTCTTAGCAGTGGGTTTGAGCTGAGACCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCGCCCCACCCCAGTTGACTTCATTGTTTGGGATTAAGTGGACAGTCCTTCACCTTCACTTCTGTGCGGCGGTGCCATCCGTTTTCCATCCGCTCGATCCTCTAAGCCCGGTGGAGCTTGACCAAATAAGGCTCGCGGTTCATAAATCCCACCTGGGAAAGCTCCCAAATCTCACATTTCACTTCGTCGACTTGGAAGAACCAGAGAAGAAAGATGTTCTTTCCTGGCTCTCTTCCAGTGAACAAAACAACCCTCTCCACCGCTCGCCCCGCCGCGCCAACGTTGTGGTCCGGGCAGCAGATTCCACCCATGAGCTACTTGTAGACCTGGCCACTTGCTCGGTCAAATCCCACCATGTCTACAACGGCCATGGCTATCCTCCTCTCACTTTTGTTGAGCTCTTTCAAGCCAGCAAGCTCCCTCTCAATTTCCCCAAATTCAAGGCTTCCATTCAGAGGAGAGGCTTGAATTTGTCTCATGTTTCTTGCATCCCATTCACAGTAGGGTGGTACGGTGAAAAAACAACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCAGCAATGTCTTCTCCAGGCCAATCGAAGGAATCATCACACTAGTCGATGTCGATTCGATGAAAATCATCAATTACTCCGACAGATTCACAGCCCCTTTACCAAAATCAGAAGGAACCGATTACCAATCAAAGAAAACAGAGCCCAAATCCTCCAACTGCAACGCCCCAAAAAGAAGATTCACCATTGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCACGTCGGTTTCAACGCCAGAGCTGGAGTTATTATCTCAACAGCTTCCATTTTCGACGACGAGAAGAAGAAATTCAGACAAGTGCTATACAGAGGACACATTTCAGAGACTTTCGTGCCGTATATGGATCCAACAAACGAATGGTACTTCAGAACTTTCATGGATATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACTCCCTGCAGCCAATAATTGACTGCCCGGAAACCGCCATGTATATCGACGGCTACATGGCCGGTGCGGACGGGCGACCACAGAAGGTATCGAGAGCGATTTGCATCTTCGAACGCCATTCGGGAGATATCTTATGGAGACATACTGAGATAAATATTCCTGGAAAAGTGATTAGACGTGGGGAACCGGAAAGTAGTTTGGTGGTTAGGATGGTGGCTACTGTTGGGAATTATGACTATGTTCTTGACTGGGAATTCAAAAGGAGTGGCTCTATTAAAGTTGGGGTTGCTTTAACGGGGCTTTTGGAGGTTAAAGCCACACCGTACACAAATAACGTCGATATAACCGAAGAAACATACGGAACTCTTATCGCCGACAACACAGTGGCCGTCAACCACGACCACTATCTAACCTACTACCTCGACCTCGACGTTGACGGCGCCGCCAATTCCTTCGTCAAAGCCAAGTTGGTAACGGCAACGACAACGGAAGTCAACGCCACGTCACCCAGAAAGAGTTACTGGAAAGTTGTCAAAGAAACCATCAAAACCGAATCTGAAGCCAAACTTCAGCTCGGCTCTTGCCCGGCTGAGCTCTTGTTTGTGAATCCCACTAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTGATCACCGGACAACCGGCTAATTCTCTACTGGCCGATGATGATTACCCTCAGATTAGAGCGGCTTACACTAAGTACCCGTTGTGGGTGACTCCCTATAACAAGTCGGAGAGATGGCCGGCGGGATTTTACGCCGATCGCAGCCGCGGAGATGATGGCTTAGCCGTTTGGGCCAAAAGGAACAGAGGAATTGAGAATAGAGATATTGTTTTATGGTACACGGTTGGGTTCCATCACAGCCCTTGCCAAGAAGAGTTTCCGGCGATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCTAATTATTTTGATAGAAACCCATTGCTTAAATGA 3936 50.64 MVKLKPSKLIFFFLLTSLLFSSVAVHRHPLDSLSPAEFELIRSLITNTTGTNITFQYVAVADPDKQSLLSWLSNPKTPPPPRRAIATVRFNKATHEILIDITQNSILSNRVYSGPAYAPYTFEEQFAAAALPLSHRPFEAAVKKRGLKMEEVVCACFSVGWFGEKKKEKRIVKVQCYYLDGSVNLYMRPVEGVTVTVDLDEMKIIGFRDRYVVPMPKAGGTEYRESMLRPPFLPRLNGIKLVQPEGPSFKVNGHSITWANWNFHLSFDERAGPIISVASIYDMEKKKHRQVLYRAFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVSLEPLRDCPENAVFMDTYMAAGDGRPVKMANTFCIFERLDGDIMWRHTEGTIPNRLIRESRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHSDQIKEEVYGPLLAENTIGVRHDHFLIYHLDLDVDGGANSFVKSNLRTVRSPDPDFPRRSYWTVVAETAKTESDARIKFGLQQAEFAIVNPNRRTRMGNPVGYRLIPKSAAGPLLSLDDYPQIRGAFSNFNVWITPYNSSEKWASGLFTDQSRGDDTLATWSHRDREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVAPPQLTSLFGIKWTVLHLHFCAAVPSVFHPLDPLSPVELDQIRLAVHKSHLGKLPNLTFHFVDLEEPEKKDVLSWLSSSEQNNPLHRSPRRANVVVRAADSTHELLVDLATCSVKSHHVYNGHGYPPLTFVELFQASKLPLNFPKFKASIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTSNVFSRPIEGIITLVDVDSMKIINYSDRFTAPLPKSEGTDYQSKKTEPKSSNCNAPKRRFTIEGHQVKWENWVFHVGFNARAGVIISTASIFDDEKKKFRQVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADSLQPIIDCPETAMYIDGYMAGADGRPQKVSRAICIFERHSGDILWRHTEINIPGKVIRRGEPESSLVVRMVATVGNYDYVLDWEFKRSGSIKVGVALTGLLEVKATPYTNNVDITEETYGTLIADNTVAVNHDHYLTYYLDLDVDGAANSFVKAKLVTATTTEVNATSPRKSYWKVVKETIKTESEAKLQLGSCPAELLFVNPTKKTKIGNPVGYRLITGQPANSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRGIENRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPLLK 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 77873252 77885734 + Tan0015204.1 Tan06g2525 757229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2525 1311 Gene3D Copper amine oxidase, catalytic domain 904 1311 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Gene3D Copper amine oxidase, catalytic domain 249 662 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 SUPERFAMILY Amine oxidase N-terminal region 27 114 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 SUPERFAMILY Amine oxidase N-terminal region 779 885 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Gene3D - 683 781 - -
Tan06g2525 1311 Gene3D - 26 118 - -
Tan06g2525 1311 Pfam Copper amine oxidase, enzyme domain 240 653 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Pfam Copper amine oxidase, enzyme domain 902 1309 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 FunFam Amine oxidase 249 663 - -
Tan06g2525 1311 Gene3D - 783 875 - -
Tan06g2525 1311 Gene3D - 120 213 - -
Tan06g2525 1311 PANTHER COPPER AMINE OXIDASE 682 1311 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Tan06g2525 1311 SUPERFAMILY Amine oxidase N-terminal region 682 778 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 FunFam Amine oxidase 682 781 - -
Tan06g2525 1311 FunFam Amine oxidase 782 875 - -
Tan06g2525 1311 Pfam Copper amine oxidase, N3 domain 781 873 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Pfam Copper amine oxidase, N3 domain 120 213 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 ProSitePatterns Copper amine oxidase copper-binding site signature. 617 630 IPR049947 -
Tan06g2525 1311 SUPERFAMILY Amine oxidase N-terminal region 117 224 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Pfam Copper amine oxidase, N2 domain 684 773 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 Pfam Copper amine oxidase, N2 domain 28 111 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 MobiDBLite consensus disorder prediction 878 899 - -
Tan06g2525 1311 SUPERFAMILY Amine oxidase catalytic domain 227 658 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Tan06g2525 1311 FunFam Amine oxidase 120 213 - -
Tan06g2525 1311 FunFam Amine oxidase 904 1311 - -
Tan06g2525 1311 ProSitePatterns Copper amine oxidase topaquinone signature. 1050 1063 IPR049948 -
Tan06g2525 1311 SUPERFAMILY Amine oxidase catalytic domain 901 1310 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2525 K00276 - - csv:101222232 1182.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2525 Tan-Chr6:77873252 Tan07g1777 Tan-Chr7:69350436 2.20E-177 dispersed
Tan06g2525 Tan-Chr6:77873252 Tan06g2526 Tan-Chr6:77887454 3.90E-211 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97