Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2548 ATGACGATGGCGATACCAGGGAGCATTGTCGCTGTTCTTCTCCTTATGTTGCTTCTCATCCTCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGCTTTTTTTCCTATTCCCGTTCTCGCACCATCAAGGTTCATGACCTTGAGAGGCCCCTTGTCCCTGATGCTGCGGATGCCACTCAAAACCAAATCAATGAGCTTCGGAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGACATTTTCGGTCCCCAAGATTACACGGACTGATCCATAAACAAAGACTTCCAGCTGCATCTCCCCATTTAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCTGATCCTTTAGAAGATATTTCTGTGGGTCAAACACTTAAACGTTCGTACTTCACAAGCCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGCCTAGGAAGTGATCAACTCCCCAAGACTGCAAGTCAAGTTATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCCATACATTCTACGGACACATCTAGGCTCCCATTGACTCTTGGAAGAGTACCTCCTAGTGATTTACAACTGAAGGATTCAGAAGTCTCAGGGAAGCATGCCTCGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTAGGCAGCTTAAATGGGACCTTATTAAATTCTCAACCAGTCAACAGTCCCGATTCTGGAAGTAGACATTGGGGTGACCCAGTTGAGCTTGCAAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCAAATTACATCTCAGATTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATCATCATTGGCCTCTTCCTGGGGTTGATCAGTTTGGCCTCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTCGCCACAATTCTATCTGATCCACTGAAAAGGGAGAGGGTAGTATCTCTTTCCGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGATGATAATTACTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTCAATGTTCATGGGAAGCAGATAAAGATGACAGAAGACCACAGAATAACTAGCTATTCAGAAAGACTACGGATAGAGCAAGCAGGAGAACCATTGAAAGATGGGGAGACACGTCTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTCAAACAACAAGACCATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCGTGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTCCTTCAGGCTAGGGAGAGATACTCCACAGGTGCAGAAAACTCAGCCGAAAAGATTGCCAATTTTTTGGTGGGCGAGGCTAGAACACTGCGTACAAAAGATAACACTTCCATAATTTTCTTAGATTTTGACGTTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1722 44.48 MTMAIPGSIVAVLLLMLLLILLLLLIACKPWRFFSYSRSRTIKVHDLERPLVPDAADATQNQINELRRDYDLEGALQTDGHFRSPRLHGLIHKQRLPAASPHLSQGDRLVPDVVPDPLEDISVGQTLKRSYFTSQIPEVQKHAKLSLGSDQLPKTASQVISHGRSYLTLEVTSGPSRGVRYSIHSTDTSRLPLTLGRVPPSDLQLKDSEVSGKHASIKWNLNNMKWELVDLGSLNGTLLNSQPVNSPDSGSRHWGDPVELASGDVITLGTTSKVYVQITSQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYHHWPLPGVDQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLSDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSDDNYFVQCANVGDSACVLNVHGKQIKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVRVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQARERYSTGAENSAEKIANFLVGEARTLRTKDNTSIIFLDFDVSHRITCKVEP 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78135906 78142286 - Tan0018147.1 Tan06g2548 757252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2548 573 SMART FHA_2 192 244 IPR000253 GO:0005515(InterPro)
Tan06g2548 573 FunFam Protein phosphatase 2C 70 297 568 - -
Tan06g2548 573 FunFam Protein phosphatase 2C 70 162 296 - -
Tan06g2548 573 Gene3D - 161 294 - -
Tan06g2548 573 SUPERFAMILY SMAD/FHA domain 166 276 IPR008984 GO:0005515(InterPro)
Tan06g2548 573 ProSiteProfiles PPM-type phosphatase domain profile. 289 561 IPR001932 -
Tan06g2548 573 ProSiteProfiles Forkhead-associated (FHA) domain profile. 193 244 IPR000253 GO:0005515(InterPro)
Tan06g2548 573 SUPERFAMILY PP2C-like 302 562 IPR036457 -
Tan06g2548 573 Gene3D - 295 564 IPR036457 -
Tan06g2548 573 CDD PP2Cc 301 561 IPR001932 -
Tan06g2548 573 CDD FHA_PP2C70-like 167 276 - -
Tan06g2548 573 Pfam FHA domain 194 269 IPR000253 GO:0005515(InterPro)
Tan06g2548 573 SMART PP2C_4 283 559 IPR001932 -
Tan06g2548 573 PANTHER PROTEIN PHOSPHATASE 2C 302 561 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan06g2548 573 Pfam Protein phosphatase 2C 300 554 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2548 K01090 - csv:101217195 1004.97