Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2550 ATGCAAGATTTCTTCGGATCCGTTCGCCGGTCCTTGGTGTTTCTAGCTCCAGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTCGAGAAGATCGGCTCGAGCATCCGTAAATCTCGAAATGGATTGTTTTCTAAGCAATCAGTGCGGGCTCTTCCTCCGGTTGCGAAGGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTTGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTTTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAAGGTCACATACGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAATCTTTCTCACCCAAATATTGTGAGATATCTGGGAACTGCCAGAGAGGAAGATTCGTTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGATCTTTCCCTGAGTCTGTTATAAGAACCTACACGAAGCAGCTATTATTGGGGCTTGAGTATCTTCATAAGAACGGCATTATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCTGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATGTATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAGTCCCATCCGCCCATTCCTGAGCATCTATCTGCTGAGGCAAAAGATTTTCTGTTAAAATGTTTACAAGAGGAACCAAACTCAAGACCTACTGCATTAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGATCCTCATGCAGCAGTTCGTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAATTCTAATGATCTAACAAAGTCTACAATCCAACATTCAACCTGTGTTGGCTTGAAGGATATTTGTGAAATGGGTAGTTTGAGGTGCTCTTCGAACTATGTGTCACAATCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTTTTTGTTAGTTCATCAATAAAGTACAACTCTATTATATCATCAAACGATTTGAATAAGAGTTTCAATCCTGTGTGTGAACCCGCTGATGACTGGACATGTAAATTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCATTCAAACTGGCCAGGAATCTATTAGTAAGGGGAATGACTTCGCTTTTCCATGTGGCCAATCAGCAGCTGAGGATGATGAAGAGGTTACGGAGTCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTTTAGAACTGAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGCAGCACTACGAATGCAGCTAATGCTTTAGGAGCAGTTGGAACTAAGAATAGCAAGAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGCGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATCCTAGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAATCGCCTCAGCTTGGGGAATGGAACAAATTGCTTCAAACACAGCCAGAGTCTTGCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAGCGAGAAATGATGCGGAGAGGAATTGTTGGAGCAATTCACTAA 1926 43.61 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSVRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQGHIRELEEEVKLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADVWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTALDLLQHPFVSCEYQDPHAAVRASSVESGKQMADSRLNSNDLTKSTIQHSTCVGLKDICEMGSLRCSSNYVSQSNWGSSNFEDDMCQIDDKDLFVSSSIKYNSIISSNDLNKSFNPVCEPADDWTCKLDESSELGGNLMELSGIQTGQESISKGNDFAFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTTNAANALGAVGTKNSKSVSNFLKLPPKCGSPSKLRGKRLSSIDPSNCSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLQTQPESCTPSFSERQRKWKEELEEELKRKREMMRRGIVGAIH 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78174735 78180718 - Tan0005002.1 Tan06g2550 757254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2550 641 FunFam Mitogen-activated protein kinase kinase kinase 2 64 356 - -
Tan06g2550 641 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2550 641 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Tan06g2550 641 CDD STKc_MAPKKK 65 327 - -
Tan06g2550 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g2550 641 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2550 641 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Tan06g2550 641 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2550 641 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Tan06g2550 641 Coils Coil 611 634 - -
Tan06g2550 641 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
Tan06g2550 641 Coils Coil 98 125 - -
Tan06g2550 641 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 52 329 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2362 Tan-Chr4:82123935 Tan06g2550 Tan-Chr6:78174735 5.00E-63 dispersed
Tan06g2550 Tan-Chr6:78174735 Tan08g0555 Tan-Chr8:5391703 5.70E-208 dispersed
Tan06g2550 Tan-Chr6:78174735 Tan01g0227 Tan-Chr1:2023667 2.20E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67818 PF00069 Pkinase 8.80E-73 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2550 K20606 - csv:101217427 1144.41