Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2562 ATGGAAATGGATCAAGTTGATTTAAGTGTTCGATTATCTGCACTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAGGACAGAATTCCTTGTCAAATTGAAGAGGGTCTGTTCCTAGGCTCTCTTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACCCATATTTTAACCATTGCTTGTTCCTTTCCACCTGCTGATCCAAATGATTTTGTATATAAAGTAGTTGGTGTCTTGGACACTAGAGATGCCGATATTAAACAGCACTTCGATGATTGTTTCAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCAGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGCGCGGTATGACTCTAACTCAAGCGTTGGAACATGTCAAGAGTAGACGACCACAGGCATCTCCAAACATCGGTTTCATGGTTCAACTCAGGGACTTTGAAACAGCTCTTCAAGCTAGCAAAGAGGATGAGATGAAATTGACAAATGTCTGA 549 40.8 MEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGSLGAAHNKDELKKLNITHILTIACSFPPADPNDFVYKVVGVLDTRDADIKQHFDDCFNFIDEGRQSGGGVLVHCFAGISRSVTITVAYLMKKRGMTLTQALEHVKSRRPQASPNIGFMVQLRDFETALQASKEDEMKLTNV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78305728 78309358 + Tan0014651.1 Tan06g2562 757266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2562 182 SMART dsp_5 30 168 IPR020422 GO:0006470(InterPro)
Tan06g2562 182 CDD DSP 31 164 - -
Tan06g2562 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 31 169 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Tan06g2562 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 171 IPR029021 -
Tan06g2562 182 Gene3D Protein tyrosine phosphatase superfamily 24 180 IPR029021 -
Tan06g2562 182 FunFam Dual specificity phosphatase 12 32 181 - -
Tan06g2562 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470(InterPro)
Tan06g2562 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311(InterPro)
Tan06g2562 182 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2562 Tan-Chr6:78305728 Tan06g2564 Tan-Chr6:78305728 1.30E-67 dispersed
Tan06g2562 Tan-Chr6:78305728 Tan06g2563 Tan-Chr6:78305728 6.00E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2562 - - - 0.0