Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2580 ATGCAGCCCGATCAGAGAAGAAAGTCGTCAATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATACTCATACTGGTGATAAAGTTGCAATTAAGAAAATCAATGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTTCGCGAGATAAAACTTCTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTCCTACCTCCATCTAGAAGGGAGTTCAAGGATATATATGTCGTGTTTGAGCTTATGGAATCTGATTTACACCAAGTTATCAAAGCAAATGACGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGTGGCTTGAAATATATACACACAGCAAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCGAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCAAGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGGGCTCCTGAACTGTGTGGTTCCTTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTTGCAGAGCTTTTAACTGGAAAACCACTTTTCCCCGGAAAGAATGTCGTCCACCAATTAGATTTGATGACAGATTTTCTGGGAACCCCGAATGCAGAAGCCATAGCCAGGGTACGAAACGAGAAAGCTCGGAGATACTTAAGCAGTATGCGTAGGAAAAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTATTGGAAAGAATGCTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAAGTTGAGAGAGAGCCATCTGCTCAACCGGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTCGAGTACCATCCAAAGATGTTGAAGGAATACTTAGATGGATCAGAACCAACCGGTTTCATGTATCCAAGTGCAGTTGACCATTTTAAGAAGCAATTTGCCTTCCTTGAAGAACACTATGGAAATGGAGCAACTGTTGCTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACATGGTGCAGAACCCGGCACAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACCAGTGGATAGGACTTGCAATATTCCTTTGACCAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGAAATGCTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACAACTGTGGAGTAACAGCAGCAGCAGTGGCACCAGAAGTTCTTGAACAGCGGAGGATGACTAGAAACCCTTCTGTCCCACCACAGTACGCCGCTAATAACTGTTCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGGGCTGAAGATGAAGCCATTGAAGGTCCAAATGGGTTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1704 42.66 MQPDQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRRKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEYLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNMVQNPAQVANDLSKCSIKEVERPPVDRTCNIPLTRVPIQVPQSIQAGNAARPGKVVGSVLRYNNCGVTAAAVAPEVLEQRRMTRNPSVPPQYAANNCSYPRRNSSCKNERAEDEAIEGPNGLQPKPQYIARKVAAAQGGPGNNWY 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78479159 78485663 + Tan0010649.1 Tan06g2580 757284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2580 567 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Tan06g2580 567 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2580 567 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Tan06g2580 567 FunFam Mitogen-activated protein kinase 111 339 - -
Tan06g2580 567 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2580 567 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Tan06g2580 567 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2580 567 FunFam Mitogen-activated protein kinase 15 119 - -
Tan06g2580 567 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g2580 567 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan06g2580 567 MobiDBLite consensus disorder prediction 524 546 - -
Tan06g2580 567 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Tan06g2580 567 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0630 Tan-Chr5:4684015 Tan06g2580 Tan-Chr6:78479159 9.80E-213 dispersed
Tan06g1997 Tan-Chr6:63993402 Tan06g2580 Tan-Chr6:78479159 3.70E-90 dispersed
Tan06g2580 Tan-Chr6:78479159 Tan06g2582 Tan-Chr6:78479159 1.70E-275 dispersed
Tan06g2580 Tan-Chr6:78479159 Tan06g2581 Tan-Chr6:78479159 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67819 PF00069 Pkinase 7.30E-68 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2580 - - - 0.0