Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2588 ATGAAGAGATTGAAAGTTCAACCATCCACAATGCGAGGCCATGATTGGATCAATACCTTCCTTCCTGACGAGCTGATCGTTGAGATCTTCCGGTGCCTTGACTCCAAGCTCAGTCGCGATGCTTGTTCTCTCGTCTGCCGGCGTTGGCTCGAGCTCGAGCGCCTCAGCCGAACCACTCTACGAATCGGTGCAACTGGTAGCCCCGACCTCTTTGTTCAGCTCCTTGCTCGCCGTTTCGTCAATGTCAGGAATGTCCATATTGACGAGCGCTTGGCGATTTCTCTTCCTCTTCATCCAGGAAGAAGACGTCGCAATGAAGCCATGCGCCATGCAACTGATAATACTGGGGCTGAAGGTACACTGGAGTCTTCTTGTCTGTCAGATGCTGGGTTAATTGCTCTCTCCGTAGGTTTTCCAAACCTTGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTGACATCCCTTGCTGAGAAGTGTAGATTTTTGAAGTCACTGGATCTACAGGGTTGCTATGTTGGGGACCGAGGTGTAGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCCCATGGTTGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCGTGTGCCAAAATAACGGATGTCTCGTTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCCTTGTCACTAGATTCAGAAATTATCCACAACAAAGGGGTGCTTTCTGTGGCCCAAGGGTGCCCACTTCTAAAAGTTTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACGAGGGATTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATAGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAACGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGGAAAATCTTGCCCCCAGCTCACTGAATTGGCTTTGCTGTACTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAGTTGCAAGTTCTTACAAGCGCTCCACTTGGTAGATTGCTCAAGAATTGGAGATGAAGCAATATGTGGCATAGCAAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGAACCCAGGAATTGTAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGACAGGGTTGGTGATGAGGCGCTTATTGCCATTGGCAAGAGTTGTTCCCTTTATCAGCTGAATGTTAGTGGGTGCCACCGTATTGGTGATGCTGGAATTGCAGCCATTGCTAGAGGTTGTCCTCAATTATGTTACTTGGATGTAAGCGTTCTCGAGAACTTGGGGGATATGGCCATGGCTGAGCTAGGGGAAGGCTGTCCCTTGCTTAAGGACATAGTTCTGTCTCACTGTCACCGAATAACTGATGCGGGTATGATGCATTTAGTGAAGAGATGCACCATGCTCGAATCCTGTCACATGGTCTATTGTCCTGGCATCACTGCAGCTGGGGTCGCCACCGTTGTTTCTAGCTGCCCGAGCATAAAGAAAGTTCTGGTTGAGAAATGGAAGGTGAGTGAGAGAACAAAACGACGTGCAGGCTCGGTCATTTCCTACCTTTGCGTGGACCTCTAG 1830 46.34 MKRLKVQPSTMRGHDWINTFLPDELIVEIFRCLDSKLSRDACSLVCRRWLELERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISLPLHPGRRRRNEAMRHATDNTGAEGTLESSCLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDRGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELAHGCGKSLKAFGIAACAKITDVSLEAVGMHCKYLESLSLDSEIIHNKGVLSVAQGCPLLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDEGLRAIGVGCKKLKNLTLSDCYFLSDIGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCPQLTELALLYCQKIVNSGLLGIGQSCKFLQALHLVDCSRIGDEAICGIAKGCRNLKKLHIRRCYEIGNPGIVAIGENCKFLTDLSLRFCDRVGDEALIAIGKSCSLYQLNVSGCHRIGDAGIAAIARGCPQLCYLDVSVLENLGDMAMAELGEGCPLLKDIVLSHCHRITDAGMMHLVKRCTMLESCHMVYCPGITAAGVATVVSSCPSIKKVLVEKWKVSERTKRRAGSVISYLCVDL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78528734 78533838 + Tan0003594.1 Tan06g2588 757292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2588 609 FunFam F-box/LRR-repeat protein 4 121 358 - -
Tan06g2588 609 CDD F-box_AtTIR1-like 21 57 - -
Tan06g2588 609 FunFam F-box/LRR-repeat protein 4 18 57 - -
Tan06g2588 609 Pfam F-box 20 58 IPR041567 -
Tan06g2588 609 Gene3D Ribonuclease Inhibitor 356 609 IPR032675 -
Tan06g2588 609 Gene3D Ribonuclease Inhibitor 266 355 IPR032675 -
Tan06g2588 609 Gene3D Ribonuclease Inhibitor 184 265 IPR032675 -
Tan06g2588 609 Gene3D - 17 57 - -
Tan06g2588 609 SUPERFAMILY RNI-like 343 590 - -
Tan06g2588 609 SUPERFAMILY RNI-like 124 361 - -
Tan06g2588 609 PANTHER UNCHARACTERIZED 21 388 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Tan06g2588 609 Pfam Leucine Rich repeat 192 212 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 163 185 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 267 288 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 422 444 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 448 470 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 473 496 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 Pfam Leucine Rich repeat 525 545 IPR001611 GO:0005515(InterPro)
Tan06g2588 609 FunFam F-box/LRR-repeat protein 4 359 609 - -
Tan06g2588 609 SUPERFAMILY F-box domain 18 52 IPR036047 GO:0005515(InterPro)
Tan06g2588 609 SMART LRR_CC_2 551 576 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 267 291 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 242 266 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 396 421 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 318 343 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 499 524 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 474 498 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 370 395 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 422 447 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 216 241 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 448 473 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 292 317 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 525 550 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 164 188 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 138 163 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 189 214 IPR006553 -
Tan06g2588 609 SMART LRR_CC_2 344 369 IPR006553 -
Tan06g2588 609 Gene3D Ribonuclease Inhibitor 120 183 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2588 K10268 - - csv:101216664 1103.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1565 Tan-Chr5:34773390 Tan06g2588 Tan-Chr6:78528734 1.30E-11 dispersed
Tan06g2588 Tan-Chr6:78528734 Tan06g2589 Tan-Chr6:78528734 5.50E-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32