Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2627 ATGTCTCTCAAGAGCATCTTTCAAGATATGAGGTCCCGCTCCCGCCGTGTGGTGCAGGACGGCTCCTCGCCGGAGCCGAGGGACGGCCTCGACCAGAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTGATGAGAATCGAGACGTCGGAGACTTCTTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAGGTTGACGTTCCCGATCGCTATCAAGCAGCCTGGTCCGAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACTAACGCATTAAGTGATGATGGTAAATTTCTACTTGCTGCTCGTAAATGCAAGCGCCCGACCTACACAGACTATATTATCTCTTTACATGCTGAGGATTTGTCAAAAGGCAGCAGCACTTATGTTGGGAAATTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTTGACGGGCAACCACCACATTCGGGAGCGAGGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCTCCCAAGGTCCCTGCAGGGAACTATCCAGTTGCCCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGTTTCTGCAGTTGAACCTGGAGGTGTGGCTCCCACGCAGACCGAGCTTTCTTTGAGCAATGTGGAATTGTTTCCATCGTTCCCGTTCCTAAGGTCAAAATCGAATGCTGATAGCTTGCTGTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGCTGGTGCTGAGAAACAAGACTCCCAGGTGGCACGAGCAGCTACAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACAATTGCTTCCGTGAAAAATTTTCAACTAGTCGCTTCTTCGGAAAATGAAACACCTACACAAGAACACGAGAAGATCATCCTTCAGTTTGGAAAAGTAGGGAAGGATGTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1161 48.75 MSLKSIFQDMRSRSRRVVQDGSSPEPRDGLDQSCWANMPQELLREVLMRIETSETSWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPIAIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGARITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPVSAVEPGGVAPTQTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSENETPTQEHEKIILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78854774 78858668 + Tan0006610.1 Tan06g2627 757331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2627 386 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Tan06g2627 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Tan06g2627 386 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Tan06g2627 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Tan06g2627 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Tan06g2627 386 PANTHER TUBBY-RELATED 25 385 - -
Tan06g2627 386 CDD F-box_AtTLP-like 35 79 - -
Tan06g2627 386 FunFam Tubby-like F-box protein 92 386 - -
Tan06g2627 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Tan06g2627 386 Gene3D Tubby Protein; Chain A 92 386 IPR025659 -
Tan06g2627 386 Gene3D - 28 83 - -
Tan06g2627 386 Pfam Tub family 97 381 IPR000007 -
Tan06g2627 386 MobiDBLite consensus disorder prediction 1 32 - -
Tan06g2627 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0484 Tan-Chr6:3594205 Tan06g2627 Tan-Chr6:78854774 1.90E-10 dispersed
Tan06g2627 Tan-Chr6:78854774 Tan11g1138 Tan-Chr11:8989235 4.50E-123 dispersed
Tan01g0880 Tan-Chr1:8465392 Tan06g2627 Tan-Chr6:78854774 2.90E-106 transposed
Tan10g0947 Tan-Chr10:8248324 Tan06g2627 Tan-Chr6:78854774 5.10E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27849 PF01167 Tub 1.70E-111 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2627 K19600 - csv:101203437 725.702