Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2636 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGACCTCGTCGGAAGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAGGAAGACGAGGAGGAGCTCGAAGCGGTAGCTCGCTCGGCAGGCTCCGACGAGGATGAAGCTGCCGACGATTCAGATAACGATACATCATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGCAATGATGACACAACCAATATTAGCAGGCGTGAGAAGGCCAGACTAAGAGAAATGCAAAAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCGCAGAATGCAGCAATTGATGCTGACATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCCCAAAAGAAAACAAAAGGAAGGGGTCGCCATGCATCAAAGCTAACTGAAGAGGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTCTAGTTTCACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGACTATATGAGAATGGCATAAACGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCTTTGTTGGGCTATCTCCACGAGTACAGAGGCATAACAGGCCCCCATATGGTGGTTGCACCAAAATCTACTCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTGTCTTGCGTGCTGTAAAGTTCCTTGGAAATCCTGATGAAAGGAGGGATATAAGGGATAATTTACTGGTTGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATCGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTTCTTTCAAAGACAATGAGGCTATATAATACTAACTATCGTCTTCTAATCACTGGCACACCGCTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGACCAGCAGGAGGTTGTTCAACAACTTCATAAGGTCCTTCGGCCTTTTCTTCTTCGAAGGTTGAAATCGGATGTCGAGAAAGGTTTACCTCCCAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAGCAATATTATCGTGCTTTACTCCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGAGACCATCTAATTACAAATGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAACGTGATTCTAGAGTTCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGTCGTATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCAGGAAGTGAAAAGTTTGTTTTCTTACTATCAACCAGGGCTGGAGGTCTTGGTATAAATCTTGCTACTGCAGATGTTGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTTCGGTTTTGCACTGAGTATACCATTGAAGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTAGATGCTCTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGAAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACAATGAGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGCATGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAGCTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAAGACACAATAGATGTTGAGGAGCCTGAAGATGTGGGTGATCCCTTGACTGCCGAAGAGCTGGAAGAGAAGGAGCGACTCTTGGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTTAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAAATGATATTAAAAGTATTGCTTCGGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCGAGGATTTCTCGTAAGGATGAAATAATGAAAGCCATCGGCAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTATAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTATGGAAACTGGGACGAACTGAAGGCAGCATTCCGTACATCGCCCCTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACGACACAAGAACTTGCAAGGAGGTGCGATACCTTAATCCGATTAGTGGAGAAGGAAAACCAGGAACACGATGAAAGGGAGAGACAGGCCCGCAAAGAAAAGAAGCTTGCAAAGAGTATGACGCCATCGAAACGTGCCTTGGCTAGGCAGACTGAGAGCCCAACTAACAACCTAAAGAAGCGGAAGCAATTATCAATGGATGACTATGTAAACTCCGGAAAGCGGAGGAAGTAA 3228 42.35 MAKPSKRQASSDEAMSNGSTSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSSPVENGEEEDGSNDGNDDTTNISRREKARLREMQKMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRDNLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRALARQTESPTNNLKKRKQLSMDDYVNSGKRRK 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 78933084 78940905 + Tan0016930.1 Tan06g2636 757340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2636 1075 MobiDBLite consensus disorder prediction 1018 1075 - -
Tan06g2636 1075 SUPERFAMILY Homeodomain-like 853 903 IPR009057 -
Tan06g2636 1075 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 762 852 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Tan06g2636 1075 Gene3D - 420 712 IPR027417 -
Tan06g2636 1075 SUPERFAMILY Homeodomain-like 905 1027 IPR009057 -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 53 79 - -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 27 42 - -
Tan06g2636 1075 CDD SF2_C_SNF 500 625 IPR049730 -
Tan06g2636 1075 CDD SANT 853 897 IPR001005 -
Tan06g2636 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 850 904 - -
Tan06g2636 1075 Gene3D - 938 1041 - -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 1042 1058 - -
Tan06g2636 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 696 IPR027417 -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 1 90 - -
Tan06g2636 1075 Coils Coil 22 42 - -
Tan06g2636 1075 Gene3D iswi atpase 905 937 - -
Tan06g2636 1075 Gene3D ISWI, HAND domain 751 849 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Tan06g2636 1075 MobiDBLite consensus disorder prediction 1018 1038 - -
Tan06g2636 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 420 712 - -
Tan06g2636 1075 SMART sant 850 899 IPR001005 -
Tan06g2636 1075 SMART sant 952 1013 IPR001005 -
Tan06g2636 1075 Coils Coil 1011 1034 - -
Tan06g2636 1075 SMART helicmild6 530 614 IPR001650 -
Tan06g2636 1075 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 655 IPR001650 -
Tan06g2636 1075 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 1045 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006357(PANTHER)|GO:0016887(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
Tan06g2636 1075 Pfam SNF2-related domain 202 479 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Tan06g2636 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 414 IPR027417 -
Tan06g2636 1075 CDD DEXHc_SMARCA1_SMARCA5 196 416 IPR044754 GO:0005524(InterPro)
Tan06g2636 1075 ProSiteProfiles SANT domain profile. 849 901 IPR017884 -
Tan06g2636 1075 SMART ultradead3 195 387 IPR014001 -
Tan06g2636 1075 Pfam SLIDE 907 1017 IPR015195 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006338(InterPro)
Tan06g2636 1075 Pfam HAND 763 847 IPR015194 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Tan06g2636 1075 Gene3D - 850 904 - -
Tan06g2636 1075 Pfam Helicase conserved C-terminal domain 501 614 IPR001650 -
Tan06g2636 1075 Gene3D - 200 415 IPR038718 -
Tan06g2636 1075 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 376 IPR014001 -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 1059 1075 - -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 142 185 - -
Tan06g2636 1075 MobiDBLite consensus disorder prediction 9 26 - -
Tan06g2636 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 751 849 - -
Tan06g2636 1075 FunFam Chromatin-remodeling complex ATPase 200 415 - -
Tan06g2636 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 938 1041 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2636 K11654 - - csv:101221495 1994.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1306 Tan-Chr1:12815419 Tan06g2636 Tan-Chr6:78933084 2.90E-126 dispersed
Tan04g1773 Tan-Chr4:50848232 Tan06g2636 Tan-Chr6:78933084 9.30E-77 dispersed
Tan06g2636 Tan-Chr6:78933084 Tan07g0776 Tan-Chr7:12461013 2.40E-126 dispersed
Tan06g2636 Tan-Chr6:78933084 Tan06g1788 Tan-Chr6:40856425 2.80E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
Vvi7g199 Blo05g00334 Blo06g00476 Bda04g00584 Bda10g00606 . Bpe06g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0684 Cone11ag0873 . . . . . . . . Bpe10g00440 . Bma09g00709 Bma15g00556 Sed09g0640 . . . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . . . .
Vvi15g844 . . . . Bpe14g00988 . . . . . Cma06g01073 Cma14g02045 . Car14g01852 . . Cpe03g01736 Bhi01g00345 . . . . . . Cla05g00160 Cam05g0175 Cec05g0173 Cco05g0184 Clacu05g0172 Cmu05g0164 Cre05g0228 Cone14ag0368 Cone15ag0405 . . Lsi05g02048 . . Cme06g00171 Blo02g00363 . . Bda13g00342 . . Bma02g01053 . Sed09g0640 . Cmo14g02109 . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . Csa03g00884 Chy06g00163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27850 PF00176 SNF2_N 2.00E-71 CL0023 Tan TR