Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2651 ATGGACCAAAATTTGGGCTCAAACATTCCACTGAACGAGTTCAATTTCAACAAAATGGTGGAGGATTTTGCTGCAGATTCTTCAGAGATCGGCAACAATGACGGCGGATCCGTCAAGGAGCCGGAAAATCTGCTGCCGATCGCCAACGTCGGTCGATTAATGAAGCAGATTCTGCCGGCGAATGCGAAGGTTTCGAAGGAAGCGAAAGAGACAATGCAGGAATGCGCGACTGAGTTCATCGGTTTTGTCACCGGTGAGGCGTCGGAGAAATGCCGAAAGGAAGGCCGCCGGACGGTCACCGGCGACGACCTGTGTTGGGCTCTGGAAGCCCTAGGATTCGACGATTTCGCCGGAGCGTTGAGAAGGTACCTTCATAAGTACCGGGAGCTGGAAGAAGACGATCATCAGAAAGGCAACCGTGATGAGAAGATAAAATAA 438 51.37 MDQNLGSNIPLNEFNFNKMVEDFAADSSEIGNNDGGSVKEPENLLPIANVGRLMKQILPANAKVSKEAKETMQECATEFIGFVTGEASEKCRKEGRRTVTGDDLCWALEALGFDDFAGALRRYLHKYRELEEDDHQKGNRDEKIK 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79030804 79031438 - Tan0019622.1 Tan06g2651 757355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2651 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 138 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan06g2651 145 SUPERFAMILY Histone-fold 42 142 IPR009072 GO:0046982(InterPro)
Tan06g2651 145 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Tan06g2651 145 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Tan06g2651 145 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Tan06g2651 145 Gene3D Histone, subunit A 33 145 IPR009072 GO:0046982(InterPro)
Tan06g2651 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 108 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2651 Tan-Chr6:79030804 Tan09g0207 Tan-Chr9:11786449 4.40E-31 dispersed
Tan06g0851 Tan-Chr6:7081433 Tan06g2651 Tan-Chr6:79030804 4.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27852 PF00808 CBFD_NFYB_HMF 3.70E-24 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2651 K08065 - gmx:100794513 174.096