Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2699 ATGTCGAACGGATTCGCCAATGCCGAAGGTGACAAAAAGAAGAAGAAAATCGCTATAATAAGCGTCTCTTCTCTAATCCTCGTGGCTATGGTCGTCGCCGTTACCGTCGGCGTCAACAACTCCCCCCTTGAAGAACACGGTGGCGGTCAAGATAACGGTAAAGGTGACGGAGCCGGAGAAATTTCGTCATCGACAAAAGCAATCAAAGCCATTTGTCAACCAACCGATTACAAAGAAACCTGCGAGCAGAGCCTAATGGCGGAAGCCGGTAACACAACGGACCCAAAAGAGCTCGCAAAAATCGGCTTGAAAGTCGCCACGGAGAAACTCAACTCGGCGATTAGAAACTCCACGACGCTTCAGGAACTAGCCAAGGATCCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTCTAGAATACGCCATTGACGATCTAACCGATTCGTTCAACCGAATCGGCACCTTCGAGATGTCGAAACTCGACGATTTCGTCAACGATATAAAGATCTGGCTGAGTGGGGCCCTCACGTACGAACAAACTTGTTTGGACGGATTCGAAAATACGACCGGCGACGCCGGTGAGAAAATGAAGGAGTTTTTGAAGACGGCGCAACAACTGACGAGCAACGGGCTTGCGATTGTAACGGAGTTGTCGTCGATTTTGGGGTCGCTGCAGATTCCGGGAATGACGGTGGGGCGACGACTGTTGGACGACGGAATTCCGGCGTGGGTCAGCGACGGAAAGAGGCGGTTGATGCAGGTGGAGACGGCGGCGATGACACCGGATGTGGTGGTGGCACAGGATGGAAGTGGAAAATACAAGACGATTAATGAAGCTTTGGTTGATGTGCCGAAGAACAGCAATAAAACATTCGTGATTTATGTGAAGGAAGGAATTTATAATGAAATTGTTGTTATTCCTAAGGCTTTGACTCATCTTACAATGTACGGTGATGGTCCCACCAAAACCGTCGTCACCGGTAATTTGAACTTTATCGACGGCGTTCAAACTTTCAAGACAGCTACCTTCTCCGTGATCGGTACGAATTTCTATGCTCGAGACATGGGATTCGAGAACAGCGCGGGAGCAGCTAAGCACCAAGCCGTGGCGCTTCGAGTCCAATCGGACCGAGCCATCTTCTACAATTGCCAAATGGACGGCTATCAAGATACTCTCTACGTCCACGCTCACCGCCAGTTCTACCGCGACTGCACAATCAGCGGCACCATCGACTTTGTGTTCGGCAACTCCGCCGCCATCTTCCAAAACTGCAAACTGGTGGTCCGTAAGCCACTGGAGAACCAACAGTGCATCGTCACGGCTCAAGGCCGGCTCGACCGCCGCGAACCGACCGCTCTTATCTTCCAAAACTGCCGCTTCATGGGCGACCCGGCTTACTTGCCATTGAAAGACATCAACAAAGCGTATTTGGGCCGGCCCTGGAAGCAATATTCACGAACCATTATTATGGGCTCTGAAATCGACGAAATAATCCAGCCCGAGGGATGGTTGCCATGGATGGGCGATTTTGGCCTCAATACGTTGTTCTACGCCGAGGTTCAGAACAAAGGACCCGGAGCCGATGAGAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCGAGGAGGTTTATCGACGGCGATGCTTGGATTAAGGACAAGGGAATTCCGTACGCTTCTGGAATGATGTAA 1728 50.98 MSNGFANAEGDKKKKKIAIISVSSLILVAMVVAVTVGVNNSPLEEHGGGQDNGKGDGAGEISSSTKAIKAICQPTDYKETCEQSLMAEAGNTTDPKELAKIGLKVATEKLNSAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLTDSFNRIGTFEMSKLDDFVNDIKIWLSGALTYEQTCLDGFENTTGDAGEKMKEFLKTAQQLTSNGLAIVTELSSILGSLQIPGMTVGRRLLDDGIPAWVSDGKRRLMQVETAAMTPDVVVAQDGSGKYKTINEALVDVPKNSNKTFVIYVKEGIYNEIVVIPKALTHLTMYGDGPTKTVVTGNLNFIDGVQTFKTATFSVIGTNFYARDMGFENSAGAAKHQAVALRVQSDRAIFYNCQMDGYQDTLYVHAHRQFYRDCTISGTIDFVFGNSAAIFQNCKLVVRKPLENQQCIVTAQGRLDRREPTALIFQNCRFMGDPAYLPLKDINKAYLGRPWKQYSRTIIMGSEIDEIIQPEGWLPWMGDFGLNTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIKDKGIPYASGMM 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79431027 79433182 - Tan0008433.1 Tan06g2699 757403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2699 575 SMART PMEI_2 63 215 IPR006501 GO:0004857(InterPro)
Tan06g2699 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 220 IPR035513 -
Tan06g2699 575 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Tan06g2699 575 FunFam Pectinesterase 258 574 - -
Tan06g2699 575 Pfam Plant invertase/pectin methylesterase inhibitor 66 215 IPR006501 GO:0004857(InterPro)
Tan06g2699 575 FunFam Pectinesterase 64 220 - -
Tan06g2699 575 MobiDBLite consensus disorder prediction 42 61 - -
Tan06g2699 575 NCBIfam pectinesterase inhibitor domain 64 219 IPR006501 GO:0004857(InterPro)
Tan06g2699 575 CDD PMEI-like_3 70 221 - -
Tan06g2699 575 Gene3D - 258 574 IPR012334 -
Tan06g2699 575 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Tan06g2699 575 Pfam Pectinesterase 264 560 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g2699 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 220 IPR035513 -
Tan06g2699 575 PANTHER PECTINESTERASE 15 564 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan06g2699 575 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2710 Tan-Chr5:78979028 Tan06g2699 Tan-Chr6:79431027 8.30E-110 dispersed
Tan06g2699 Tan-Chr6:79431027 Tan09g0150 Tan-Chr9:7607219 9.50E-178 dispersed
Tan11g2250 Tan-Chr11:63415248 Tan06g2699 Tan-Chr6:79431027 2.60E-138 transposed
Tan10g1033 Tan-Chr10:9186330 Tan06g2699 Tan-Chr6:79431027 3.20E-210 wgd
Tan06g0778 Tan-Chr6:6097598 Tan06g2699 Tan-Chr6:79431027 8.00E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2699 K01051 - csv:101221958 944.88