Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2707 ATGTGCGGTGGTGCAATTATCTCTGATTTTATAGAAAAAAAACGCAGTCGGAAGCTTAATAATGGATCTCTCTGGTCCGACATCGACCCTTTTTCAGACCTCCTCGGCCTTGATTATTCCACTGTGAAAGTTGAGAAGCTTCAGAAAACGGCTGAGAAGGCGGCGGCGCCGGTGCCGGAGAAGACTCGAAAAGCTCGGAAAAATATGTACAGAGGAATCCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGGGACCCACATAAAGGCGTTCGAGTTTGGCTCGGCACTTTCAACACCGCCGAGGAAGCCGCCAGAGCCTACGATGAGGCGGCCAAACGGATCCGAGGAACAAAGGCAAAACTCAACTTCGCTCCTCCTCCGCCGCTGTCGCCGCCGCCGTTATCGGCGGATCAGCCTCAAGTTCCGTCTAAAAAGCGGTGCGTCGTCCCCCAGTCCCCTCGGGATTGTTTCAGTTCCACCGGTCCGCCGCCGTCGGGTACGCGTGCGAGTAACTCGTGTGACATTAACGGGCTTTACTACGGCGAGGAATTGGCGAGTTTAAGATCTTTCTTTGGCCTGGATTTTGAAGAGCAACAGCCGGGTCAACTCGGTGGAAATGACGAGTTTGACCGAGTTGTGGACCTTTGGATGATGGACGACATGTCGTTGAATCAGCAGAAATTCAGTCAACTGGTGTAA 705 53.9 MCGGAIISDFIEKKRSRKLNNGSLWSDIDPFSDLLGLDYSTVKVEKLQKTAEKAAAPVPEKTRKARKNMYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDEAAKRIRGTKAKLNFAPPPPLSPPPLSADQPQVPSKKRCVVPQSPRDCFSSTGPPPSGTRASNSCDINGLYYGEELASLRSFFGLDFEEQQPGQLGGNDEFDRVVDLWMMDDMSLNQQKFSQLV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79481058 79482521 + Tan0017107.1 Tan06g2707 757411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2707 234 CDD AP2 70 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 Coils Coil 102 122 - -
Tan06g2707 234 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Tan06g2707 234 MobiDBLite consensus disorder prediction 155 173 - -
Tan06g2707 234 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 SMART rav1_2 69 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 MobiDBLite consensus disorder prediction 122 173 - -
Tan06g2707 234 MobiDBLite consensus disorder prediction 126 140 - -
Tan06g2707 234 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 PANTHER DNA-BINDING DOMAIN 55 147 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan06g2707 234 Pfam AP2 domain 70 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g2707 234 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2707 K09286 - - csv:101222764 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2707 Tan-Chr6:79481058 Tan11g1121 Tan-Chr11:8870214 2.90E-24 dispersed
Tan11g0474 Tan-Chr11:3904455 Tan06g2707 Tan-Chr6:79481058 1.40E-16 dispersed
Tan11g1529 Tan-Chr11:14090987 Tan06g2707 Tan-Chr6:79481058 2.10E-16 dispersed
Tan11g1937 Tan-Chr11:30080991 Tan06g2707 Tan-Chr6:79481058 1.60E-17 dispersed
Tan10g1039 Tan-Chr10:9274592 Tan06g2707 Tan-Chr6:79481058 4.10E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
Vvi7g335 . . . . Bpe03g00472 . Bma10g00984 . . . . Cma14g00916 . Car14g00834 . . . . . . . . . . . . . . . . . . . Cone18ag0731 Cone11ag0675 . . . . Blo07g00576 . Bda05g00375 . . . . . Sed09g0260 . Cmo14g00943 . . . . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla10g01062 Cam10g1093 Cec10g1126 Cco10g1096 Clacu10g1110 Cmu10g1887 Cre10g1272 . Csa04g00099 . Cme07g02122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002900 0 2 0 1 1 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 3 2 2 2 2 2 2 3 2 1 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27853 PF00847 AP2 5.90E-15 CL0081 Tan TF