Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2719 ATGGGTGTTTTCACTTATGAAAACGAAGTGGCCACTGTCATTCCTCCAGCCAAGTTCTTTAAGGCATTTATCCTTGATGCTGACCAATTATATCCCAAGATTGTGCCACATCAGCCCCAAACCGAAGTTGTCGAAGGAGATGGAGGGCCTGGAACTATTAAAAAAATCACCTTCAATCACGGTGGCCAAGTGAAATCCATAAAGCACAGGCTAGATGTAGTGGATGAAGGATCGTTGACATATAAATATACAGTGCTAGAAGGAGAGCTTTTATCAGACTCTATAGACCAAATTTCAAAAGAAATAAAGGTGATACCAGGTCCCGATGGAGGATCCATTTTGAAGAGCATAAGCATTTACCATACTGTAGGAGACCACCAAATTGATGAAGCGAAGCTCAAGATCGGTGAGGAAAAGGGATTGGGCCTTCTCAAGGCCGCCGAGAACTACCTCTTGGCCAACCCCGGCGAATACAACTAA 480 43.96 MGVFTYENEVATVIPPAKFFKAFILDADQLYPKIVPHQPQTEVVEGDGGPGTIKKITFNHGGQVKSIKHRLDVVDEGSLTYKYTVLEGELLSDSIDQISKEIKVIPGPDGGSILKSISIYHTVGDHQIDEAKLKIGEEKGLGLLKAAENYLLANPGEYN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79559671 79561429 + Tan0000099.1 Tan06g2719 757423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2719 159 SMART Bet_v_1_2 1 154 IPR000916 GO:0006952(InterPro)
Tan06g2719 159 SUPERFAMILY Bet v1-like 2 156 - -
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Tan06g2719 159 Gene3D - 2 157 IPR023393 -
Tan06g2719 159 Pfam Pathogenesis-related protein Bet v 1 family 1 153 IPR000916 GO:0006952(InterPro)
Tan06g2719 159 CDD Bet_v1-like 4 151 - -
Tan06g2719 159 FunFam Major pollen allergen Bet v 1-A 1 158 - -
Tan06g2719 159 PANTHER OS03G0300400 PROTEIN-RELATED 1 157 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2719 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2719 Tan-Chr6:79559671 Tan10g1047 Tan-Chr10:9357015 3.70E-31 dispersed
Tan06g2718 Tan-Chr6:79554674 Tan06g2719 Tan-Chr6:79559671 7.30E-80 tandem
Tan06g2719 Tan-Chr6:79559671 Tan06g2720 Tan-Chr6:79564394 1.10E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0740 . Cone7ag0122 Cone4ag0125 . . . . Blo02g00489 . . . . . . . . . . . . . . . . Bhi12g01894 Tan06g2719 Cmetu11g0065 . . . Lcy12g0773 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145