Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2739 ATGTCTCTCTCTATGAAAGCTGACGTTCAAGGAAACCTTGTGGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTCGTCATCCACGTTAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGGAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACAGTAAAAGAAGCGCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCTCATGGCCTAGATAACCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAATTCTCCATCCGCATCTATAAATTCAAATTCTGGTTGTGTCTCTGACATATCAACTCCTCAGCTTTTATCGGAAGAACTTGATTCTAGGGCTAATCATGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTAACAAATGAACCTTTCAAACCTGCCATGCCTAAAGGAGACAGACCTTCATACTTTGACCAACGGAACCAAGTTGCAATAAATGTGGCCAACAATTTATTGGGGGACATGTCTTCGTTTAATAATCCAGTTGAGTCAACTGAGAGTGCTGACGGCACTATCAGTTTTACAGGGAGTGCCTATATGCCGATAATGCGTGGTCAGAAAAATTTGAATGTAGAGACTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTCTTCACTGAGTCTCCGGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCTATACTGATCCGACATTAGATCACCGTCAACCTTCTGTTATGGAGCAAATTTTTAACATAACCGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGATTTTGTACATCTCGCAAAGTCCAATATATTGGTAGTGTGTGGTAATACTAGTGTTAATGCTGATTTTATTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCAACAGGACTAGTACAATTATACGTGAGCTTAGATGGTCACAAACCTATAAGTCAAGTTTTGAATTTTGAGTATCGTGCACCACTTTTACAAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAAGAGTTTCAAGTTCAGATGCGGCTTGCTTATCTGTTGTTCTCTACATCCAAAAGCCTGAGCATCATGTCAACCAAATTGTCACCCATTGCCCTGAATGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAACTCAATTAAAGAAAATAACACTCCATTTCCACAAGCAAGAGAGGGGGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTTGATGTCAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTAGGATATACCTGGGCTATATATCTATTTGCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCAGTTCTTTTATCAGTGGGGGCGAAGCCGAACTTGGTCACCGATCCCTCATCAAGGAACCCTCTGGGATGTACCGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTATCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGAGATGAGCTTGGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAACAACCGATGCCAGTTACCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGCCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGTAAGATTGTATGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGCTTTCGTGGCCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCCTGAAATTGGCATAGTGGAGGTAGAGGACTTCTACCGTGTGTCTCAAAAACAAGCAGAAGAGCGAGTTGAGAAAGCTGTTGTACGGGTTCAGGCCATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGGAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAAATTGAGTCACTGA 2760 41.56 MSLSMKADVQGNLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQENSPSASINSNSGCVSDISTPQLLSEELDSRANHVYSVGENELSEPSDTTTVMNHEQRLHEINTLEWDELLVTNEPFKPAMPKGDRPSYFDQRNQVAINVANNLLGDMSSFNNPVESTESADGTISFTGSAYMPIMRGQKNLNVETKESIPITSLDNLLNDGLQSQDSFGRWINEVFTESPGTVIDPAIEPSISSIHNSYTDPTLDHRQPSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNDFVHLAKSNILVVCGNTSVNADFIQPGVYRCLVQPHSTGLVQLYVSLDGHKPISQVLNFEYRAPLLQEPVVASEQIQKWEEFQVQMRLAYLLFSTSKSLSIMSTKLSPIALNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQAREGVLEIILRSRLREWLIERVAEGSKKSTDFDVKGQGVIHLCAILGYTWAIYLFAWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSRNPLGCTAADLASMNGYDGLSAYLSEKALVSHFNEMSLAGNVSGSLETSTTTDASYPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEVTEQPEIGIVEVEDFYRVSQKQAEERVEKAVVRVQAMFRSKKAQEEYRRMKLTYDEAALEYEELSHPDMKLSH 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79726525 79738546 + Tan0012825.1 Tan06g2739 757443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2739 919 ProSiteProfiles IQ motif profile. 770 796 - -
Tan06g2739 919 Pfam IPT/TIG domain 369 454 IPR002909 -
Tan06g2739 919 Gene3D Immunoglobulins 362 458 IPR013783 -
Tan06g2739 919 SMART iq_5 769 791 IPR000048 GO:0005515(InterPro)
Tan06g2739 919 SMART iq_5 872 894 IPR000048 GO:0005515(InterPro)
Tan06g2739 919 SMART iq_5 792 814 IPR000048 GO:0005515(InterPro)
Tan06g2739 919 SMART iq_5 716 738 IPR000048 GO:0005515(InterPro)
Tan06g2739 919 ProSiteProfiles IQ motif profile. 793 817 - -
Tan06g2739 919 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
Tan06g2739 919 SUPERFAMILY E set domains 368 455 IPR014756 -
Tan06g2739 919 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
Tan06g2739 919 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515(InterPro)
Tan06g2739 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 820 IPR027417 -
Tan06g2739 919 Coils Coil 886 906 - -
Tan06g2739 919 ProSiteProfiles IQ motif profile. 717 746 - -
Tan06g2739 919 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Tan06g2739 919 SMART ANK_2a 605 634 IPR002110 GO:0005515(InterPro)
Tan06g2739 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 902 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan06g2739 919 Gene3D - 511 668 IPR036770 -
Tan06g2739 919 ProSiteProfiles IQ motif profile. 874 902 - -
Tan06g2739 919 Gene3D - 771 817 - -
Tan06g2739 919 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515(InterPro)
Tan06g2739 919 SUPERFAMILY Ankyrin repeat 569 667 IPR036770 -
Tan06g2739 919 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515(InterPro)
Tan06g2739 919 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2739 K21596 - - csv:101211298 1511.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2739 Tan-Chr6:79726525 Tan06g2741 Tan-Chr6:79726940 0.00E+00 dispersed
Tan06g2739 Tan-Chr6:79726525 Tan06g2740 Tan-Chr6:79726525 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27858 PF12796 Ank_2 8.50E-07 CL0465 Tan TF