Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2741 ATGCTTAGGAATTTCCGGAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACAGTAAAAGAAGCGCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCTCATGGCCTAGATAACCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAATTCTCCATCCGCATCTATAAATTCAAATTCTGGTTGTGTCTCTGACATATCAACTCCTCAGCTTTTATCGGAAGAACTTGATTCTAGGGCTAATCATGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTAACAAATGAACCTTTCAAACCTGCCATGCCTAAAGGAGACAGACCTTCATACTTTGACCAACGGAACCAAGTTGCAATAAATGTGGCCAACAATTTATTGGGGGACATGTCTTCGTTTAATAATCCAGTTGAGTCAACTGAGAGTGCTGACGGCACTATCAGTTTTACAGGGAGTGCCTATATGCCGATAATGCGTGGTCAGAAAAATTTGAATGTAGAGACTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTCTTCACTGAGTCTCCGGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCTATACTGATCCGACATTAGATCACCGTCAACCTTCTGTTATGGAGCAAATTTTTAACATAACCGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGATTTTGTACATCTCGCAAAGTCCAATATATTGGTAGTGTGTGGTAATACTAGTGTTAATGCTGATTTTATTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCAACAGGACTAGTACAATTATACGTGAGCTTAGATGGTCACAAACCTATAAGTCAAGTTTTGAATTTTGAGTATCGTGCACCACTTTTACAAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAAGAGTTTCAAGTTCAGATGCGGCTTGCTTATCTGTTGTTCTCTACATCCAAAAGCCTGAGCATCATGTCAACCAAATTGTCACCCATTGCCCTGAATGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAACTCAATTAAAGAAAATAACACTCCATTTCCACAAGCAAGAGAGGGGGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTTGATGTCAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTAGGATATACCTGGGCTATATATCTATTTGCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCAGTTCTTTTATCAGTGGGGGCGAAGCCGAACTTGGTCACCGATCCCTCATCAAGGAACCCTCTGGGATGTACCGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTATCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGAGATGAGCTTGGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAACAACCGATGCCAGTTACCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGCCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGTAAGATTGTATGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGCTTTCGTGGCCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCCTGAAATTGGCATAGTGGAGGTAGAGGACTTCTACCGTGTGTCTCAAAAACAAGCAGAAGAGCGAGTTGAGAAAGCTGTTGTACGGGTTCAGGCCATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGGAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAAATTGAGTCACTGA 2529 41.48 MLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQENSPSASINSNSGCVSDISTPQLLSEELDSRANHVYSVGENELSEPSDTTTVMNHEQRLHEINTLEWDELLVTNEPFKPAMPKGDRPSYFDQRNQVAINVANNLLGDMSSFNNPVESTESADGTISFTGSAYMPIMRGQKNLNVETKESIPITSLDNLLNDGLQSQDSFGRWINEVFTESPGTVIDPAIEPSISSIHNSYTDPTLDHRQPSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNDFVHLAKSNILVVCGNTSVNADFIQPGVYRCLVQPHSTGLVQLYVSLDGHKPISQVLNFEYRAPLLQEPVVASEQIQKWEEFQVQMRLAYLLFSTSKSLSIMSTKLSPIALNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQAREGVLEIILRSRLREWLIERVAEGSKKSTDFDVKGQGVIHLCAILGYTWAIYLFAWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSRNPLGCTAADLASMNGYDGLSAYLSEKALVSHFNEMSLAGNVSGSLETSTTTDASYPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEVTEQPEIGIVEVEDFYRVSQKQAEERVEKAVVRVQAMFRSKKAQEEYRRMKLTYDEAALEYEELSHPDMKLSH 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79726940 79738546 + Tan0012825.3 Tan06g2741 757445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2741 842 SUPERFAMILY Ankyrin repeat 492 590 IPR036770 -
Tan06g2741 842 Pfam IQ calmodulin-binding motif 718 737 IPR000048 GO:0005515(InterPro)
Tan06g2741 842 ProSiteProfiles IQ motif profile. 640 669 - -
Tan06g2741 842 Gene3D - 434 591 IPR036770 -
Tan06g2741 842 ProSiteProfiles Ankyrin repeat region circular profile. 528 556 - -
Tan06g2741 842 FunFam Calmodulin-binding transcription activator 2 693 740 - -
Tan06g2741 842 SMART iq_5 795 817 IPR000048 GO:0005515(InterPro)
Tan06g2741 842 SMART iq_5 715 737 IPR000048 GO:0005515(InterPro)
Tan06g2741 842 SMART iq_5 639 661 IPR000048 GO:0005515(InterPro)
Tan06g2741 842 SMART iq_5 692 714 IPR000048 GO:0005515(InterPro)
Tan06g2741 842 Gene3D Immunoglobulins 285 381 IPR013783 -
Tan06g2741 842 ProSiteProfiles CG-1 DNA-binding domain profile. 1 78 IPR005559 GO:0003677(InterPro)
Tan06g2741 842 Pfam Ankyrin repeats (3 copies) 500 588 IPR002110 GO:0005515(InterPro)
Tan06g2741 842 Pfam CG-1 domain 2 71 IPR005559 GO:0003677(InterPro)
Tan06g2741 842 SUPERFAMILY E set domains 291 378 IPR014756 -
Tan06g2741 842 ProSiteProfiles IQ motif profile. 797 825 - -
Tan06g2741 842 Gene3D - 694 740 - -
Tan06g2741 842 MobiDBLite consensus disorder prediction 1 20 - -
Tan06g2741 842 SMART CG_1_2 1 73 IPR005559 GO:0003677(InterPro)
Tan06g2741 842 ProSiteProfiles Ankyrin repeat profile. 528 560 IPR002110 GO:0005515(InterPro)
Tan06g2741 842 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 825 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan06g2741 842 Coils Coil 809 829 - -
Tan06g2741 842 ProSiteProfiles IQ motif profile. 693 719 - -
Tan06g2741 842 Pfam IPT/TIG domain 292 377 IPR002909 -
Tan06g2741 842 SMART ANK_2a 528 557 IPR002110 GO:0005515(InterPro)
Tan06g2741 842 ProSiteProfiles IQ motif profile. 716 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2741 K21596 - - csv:101211298 1361.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2739 Tan-Chr6:79726525 Tan06g2741 Tan-Chr6:79726940 0.00E+00 dispersed
Tan06g2741 Tan-Chr6:79726940 Tan10g1107 Tan-Chr10:10702082 1.30E-98 dispersed
Tan06g2740 Tan-Chr6:79726525 Tan06g2741 Tan-Chr6:79726940 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27860 PF12796 Ank_2 1.10E-06 CL0465 Tan TF