Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2753 ATGACTCTGAGCCTGTCCTGCCATGCCGCTCTTCACCTTCAACATCAAGTGGCTTCCAAGAACAACAGCAACAAGAACCTCGACAGCGTAAGAAACCTCGTAAAACGAATTGGAATTGCTTCAGTTCAATCTTCTCCTCTTGAATCTCTCCGAAATGGCAACTGGGTCAAGCTTATTTGCGGTGCAAGTTTCGAGGATGTGGTTGATATTAGGAATCTCTCACTTGTTTACACCCTTGCTGGGGTTGATTGTATTGATTGTGCTGCTGATGCATCGGTTGTTAGTGCGGTGAATGAGGGAATTCAAGCAGCAAGAGGGATTGTTGGTGTTCGTAGGCCTTGGGTGATGATTAGTGTTAATGATGATCAAGATCTTCACTTCCGCAAAGCTGAGTTTGATCCTGAGAATTGTCCAATTGACTGTTCAAGGCCTTGTGAAATTGTTTGCCCTGCTAATGCAATCTCACTACATGAAGAAACCATGCAAGAGCTTTCACAAGTAGCTAGTGTATTTGGAGGATTGAAGGGCGGAGTAATCACGGAGCGCTGTTATGGTTGTGGTCGTTGCTCTCCCGTCTGCCCATATGATAAAATAAAGCTAGCCACATATGTAAGAGATGCAGCTACTACTGCTGAACTTATAAAACGGAGCGATGTCGATGCATTGGAGATTCACACCAATGGAAGGCAAACCACTCCTTTTCAAGAACTTTGGGATAAATTAGGGGACTCATCCAAATATCTAAGGCTAATAGCAGTAAGCCTACCTAATATTGGGGATTTAACAGTATCTACAATGAAAACGATGTACTCGATGATGGAATCTCGGCTCCATTGTTTGAACTTATGGCAGGTCTGCCTTGAACTTCATAAAGCCAAACAAATTACTTTCACTTATATATCTCTATGA 909 42.9 MTLSLSCHAALHLQHQVASKNNSNKNLDSVRNLVKRIGIASVQSSPLESLRNGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIQAARGIVGVRRPWVMISVNDDQDLHFRKAEFDPENCPIDCSRPCEIVCPANAISLHEETMQELSQVASVFGGLKGGVITERCYGCGRCSPVCPYDKIKLATYVRDAATTAELIKRSDVDALEIHTNGRQTTPFQELWDKLGDSSKYLRLIAVSLPNIGDLTVSTMKTMYSMMESRLHCLNLWQVCLELHKAKQITFTYISL 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79806068 79810801 + Tan0003015.2 Tan06g2753 757457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2753 302 Gene3D - 119 240 - -
Tan06g2753 302 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 174 203 IPR017896 -
Tan06g2753 302 Pfam Iron-Sulfur binding protein C terminal 213 285 IPR021039 -
Tan06g2753 302 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 128 159 IPR017896 -
Tan06g2753 302 Pfam 4Fe-4S dicluster domain 139 196 IPR017896 -
Tan06g2753 302 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 183 194 IPR017900 -
Tan06g2753 302 SUPERFAMILY 4Fe-4S ferredoxins 121 209 - -
Tan06g2753 302 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 41 276 IPR013283 GO:0000054(PANTHER)|GO:0005506(PANTHER)|GO:0005524(PANTHER)|GO:0006413(PANTHER)|GO:0006415(PANTHER)|GO:0043024(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2753 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2753 Tan-Chr6:79806068 Tan06g2755 Tan-Chr6:79806068 1.70E-173 dispersed
Tan06g2752 Tan-Chr6:79806068 Tan06g2753 Tan-Chr6:79806068 1.70E-173 tandem
Tan06g2753 Tan-Chr6:79806068 Tan06g2754 Tan-Chr6:79806068 1.70E-173 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g65 . . Bda03g01182 . Bpe04g01115 . Bma04g01126 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0721 . . . . Csa06g01740 Chy11g01566 . . . . . . . . . Sed04g3104 . . . Cma17g00367 . Car17g00340 . . Bhi12g01926 Tan06g2753 Cmetu11g0714 . . . Lcy12g0804 . . . . . . . Lsi09g01487 . . Cme11g02078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 35