Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2778 ATGTTAGTTATTTGTATGGAGAAGAAGAAAGAAGAGTTATTAAAGAAAGAGAATTGGAATTCGATGGGAAATTCTGGTTTGTTATTCTCCGATCCGATTCCGAGTGCCATGTTCGATTTCCCATTGGACTCCACTGACTCATCTTCCTTTAAGCCATCCACCTTCTTGGATTTGTTAGCCATCCAAGATTACACCCCTTCTTTATTTGATCTTTTCTCTGCACCTCCCACCACCGCTCTTGTTCCTCCGCCGCCGCCTCCTCCGCCCTCCTCCGCCGTACCGGAGTCATCTGAGGTTTTGAATACTCCTCCAACTCCTAATTCCTCCTCTGTTTCTTGCTCCTCCAACGAAAGAGCTTTCGATGCCGATGAGGTGGATCGGGATAAGTCGCCTTTCAACAAACAGTTGAAAGCGAAAAACAAGAATAAAAAAAGGGCAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTGGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCATATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTTAAAAAGCGAGTCGAACGATCCTCCGACGACCCTTCCGTCGTCGTCACCACCTACGAAGGCCAACACACCCATCAAAGTCCAATCATGCCACGTGGAGCCCTCTCGTCATCCATTTCCAACGAAGCCGTCGCCGCCGCCGCCGCCTTCGCTGCCTCACAACAACCGCAGCTTGTTTTCTCACAGCCGCAATACCGCCACCAACAATACACATATAGTACTCCGGCGCCGCCCATAGACGATGTCACGTGCGGGGGATTTGATCCGGTGTTCCCTAGTTTCGGATCAGAAGAACGGCGTCGTATTGGCGGATCCTCTTCGAATTCTGATTCTTTCAAAGATCATGGCCTTCTGCAAGATATGATCGTACCGTCCTCCTCCTTACACATCCCCAAAGAAGAGTAA 987 49.44 MLVICMEKKKEELLKKENWNSMGNSGLLFSDPIPSAMFDFPLDSTDSSSFKPSTFLDLLAIQDYTPSLFDLFSAPPTTALVPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSNERAFDADEVDRDKSPFNKQLKAKNKNKKRAREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGALSSSISNEAVAAAAAFAASQQPQLVFSQPQYRHQQYTYSTPAPPIDDVTCGGFDPVFPSFGSEERRRIGGSSSNSDSFKDHGLLQDMIVPSSSLHIPKEE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79967303 79969252 + Tan0013130.1 Tan06g2778 757482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2778 328 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 235 IPR044810 GO:0003700(InterPro)
Tan06g2778 328 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2778 328 MobiDBLite consensus disorder prediction 94 117 - -
Tan06g2778 328 MobiDBLite consensus disorder prediction 79 93 - -
Tan06g2778 328 MobiDBLite consensus disorder prediction 289 328 - -
Tan06g2778 328 FunFam WRKY transcription factor 57 148 222 - -
Tan06g2778 328 Gene3D WRKY domain 147 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2778 328 SMART WRKY_cls 162 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2778 328 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g2778 328 MobiDBLite consensus disorder prediction 294 308 - -
Tan06g2778 328 MobiDBLite consensus disorder prediction 79 149 - -
Tan06g2778 328 MobiDBLite consensus disorder prediction 119 135 - -
Tan06g2778 328 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0079 Tan-Chr2:933675 Tan06g2778 Tan-Chr6:79967303 2.80E-35 dispersed
Tan02g2254 Tan-Chr2:91544086 Tan06g2778 Tan-Chr6:79967303 2.60E-38 dispersed
Tan02g2255 Tan-Chr2:91544086 Tan06g2778 Tan-Chr6:79967303 4.70E-39 dispersed
Tan04g2314 Tan-Chr4:81400396 Tan06g2778 Tan-Chr6:79967303 2.60E-36 dispersed
Tan05g0625 Tan-Chr5:4648497 Tan06g2778 Tan-Chr6:79967303 5.40E-36 dispersed
Tan06g2778 Tan-Chr6:79967303 Tan10g1087 Tan-Chr10:10214516 1.00E-51 dispersed
Tan07g0964 Tan-Chr7:21813025 Tan06g2778 Tan-Chr6:79967303 2.90E-08 dispersed
Tan07g0965 Tan-Chr7:21817078 Tan06g2778 Tan-Chr6:79967303 2.50E-08 dispersed
Tan10g0137 Tan-Chr10:1480640 Tan06g2778 Tan-Chr6:79967303 3.10E-14 dispersed
Tan06g2778 Tan-Chr6:79967303 Tan06g0714 Tan-Chr6:5453674 5.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27862 PF03106 WRKY 6.40E-27 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2778 - - - 0.0