Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2812 ATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACATCGTGCCCGTCAGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCCTATTGTAGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAGCCTGACGTCTACACTTATAGTACCTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAATTAGTCGAATCTTTGTATGAGGAAATGGCCGAACGGCTGATAACTCCAAATACAGTGACCCAGAACATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTATTAGGAATGCTCGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAACAAGGGGCATATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATTGAGCCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGAAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAATATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATCGAAGCTTTTGCAGATGTGGGAGATGCAAAGAACATGGAGTACACATTCGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCGTGTGCCAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAACCAGATAGTAAAACATATTCTATTATGATAGAAGCATATGGAAAGGAAGGCATGAATGATAGGGTTCATTACTTGGAGCTAGAAAAGAAGCAGGTGATCGATGGTGCTCCTAATAACGAGTGA 1101 41.24 MLREQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYGKEGMNDRVHYLELEKKQVIDGAPNNE 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 80226249 80228236 - Tan0007730.2 Tan06g2812 757516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2812 366 Pfam PPR repeat 122 146 IPR002885 -
Tan06g2812 366 Pfam PPR repeat 14 43 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 11 45 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Tan06g2812 366 Pfam PPR repeat family 293 340 IPR002885 -
Tan06g2812 366 Pfam PPR repeat family 152 200 IPR002885 -
Tan06g2812 366 Pfam PPR repeat family 46 94 IPR002885 -
Tan06g2812 366 Pfam PPR repeat family 224 271 IPR002885 -
Tan06g2812 366 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515(InterPro)
Tan06g2812 366 PANTHER OS03G0856100 PROTEIN 10 221 - -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 152 IPR002885 -
Tan06g2812 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Tan06g2812 366 Gene3D Tetratricopeptide repeat domain 146 216 IPR011990 GO:0005515(InterPro)
Tan06g2812 366 Gene3D Tetratricopeptide repeat domain 282 358 IPR011990 GO:0005515(InterPro)
Tan06g2812 366 Gene3D Tetratricopeptide repeat domain 217 281 IPR011990 GO:0005515(InterPro)
Tan06g2812 366 NCBIfam pentatricopeptide repeat 119 153 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 226 258 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 84 117 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 297 329 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 14 46 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 191 219 IPR002885 -
Tan06g2812 366 NCBIfam pentatricopeptide repeat 49 83 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2812 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2812 Tan-Chr6:80226249 Tan01g4213 Tan-Chr1:106916586 8.30E-10 dispersed
Tan06g2811 Tan-Chr6:80226249 Tan06g2812 Tan-Chr6:80226249 3.30E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35