Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0080 ATGGATCCTAAAACCTCATCAACAACAACATCAAGAACAAAGCAGCCCGAAGAAGTGGTACCCAACTTTTTGAACTTCCATCAAGAAGAAGAATCAATCATGGGTGAAAACAAACCAGCTGAAATCAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAAGGGAAAAAACAGTTAGCCCCAAAAAGAAGCTCGAACAAAGACCGTCACACCAAAGTCGAAGGCCGAGGCCGAAGAATCCGGATGCCGGCTCTTTGTGCGGCGAGGATTTTTCAATTGACGAGGGAATTGGGTCATAAATCCGATGGTGAAACCATCCAGTGGCTGCTACAGCAAGCGGAGCCGTCGATAATCGCCGCCACTGGTACCGGAACCATCCCGGCTTCAGCCTTAGCGGCGGCGGCGGGTTCCGTTTCGCAACAGGGGGCTTCTCTTTCCGCCGGATTGCAACAAAAATTGGAGGAATTAAGCGCTGGCGGGTCCAGTAGGGCCAATTGGGGCAATTTTGGGCGACCCCATTTGGCCGCCACAGCCACAGCGCTTTGGCCCTCCTCTGTCAGTGGCTTTGGGTTTCAGTCATCAACTGCTGCTGTTTGTGCTTCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGCTTCCCACCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCAACAGTTACCTGGTTTAGAGCTTGGATTGTCCCAAGAGGGCCATATTGGGGCTATAAATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAAGCTAGAGTTCATCAGCATCATCATCAACAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGGGTAG 906 48.57 MDPKTSSTTTSRTKQPEEVVPNFLNFHQEEESIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLQQKLEELSAGGSSRANWGNFGRPHLAATATALWPSSVSGFGFQSSTAAVCASGVAQSATNLANETSNYFHKLGFPPFDLPPTNMGPMSFTSILGANTQQLPGLELGLSQEGHIGAINPQALNQIYQQMGQARVHQHHHQQQPPAKDDSQDSG 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2962588 2965148 - Tan0002573.1 Tan07g0080 757611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0080 301 MobiDBLite consensus disorder prediction 277 301 - -
Tan07g0080 301 MobiDBLite consensus disorder prediction 52 75 - -
Tan07g0080 301 MobiDBLite consensus disorder prediction 1 20 - -
Tan07g0080 301 Pfam TCP family transcription factor 65 152 IPR017887 -
Tan07g0080 301 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Tan07g0080 301 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 291 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan07g0080 301 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1094 Tan-Chr3:67128206 Tan07g0080 Tan-Chr7:2962588 3.20E-27 dispersed
Tan07g0080 Tan-Chr7:2962588 Tan09g2130 Tan-Chr9:71602131 8.50E-29 dispersed
Tan07g0080 Tan-Chr7:2962588 Tan07g0081 Tan-Chr7:2962588 2.00E-158 tandem
Tan06g2129 Tan-Chr6:70499293 Tan07g0080 Tan-Chr7:2962588 2.30E-29 transposed
Tan06g1482 Tan-Chr6:20283738 Tan07g0080 Tan-Chr7:2962588 1.40E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27869 PF03634 TCP 2.90E-31 No_clan Tan TF