Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0088 ATGGAGAATTATCAGATGTTTTTCCCTTGCTCCGACGGCGGCGGGCTGTCGGCTTATCATCATGCCGCCGACATGTCGTCCAGCGGCGGGTCTGATATGATGTTCGCGAGTTTTCACGGCGGCGATCTGCAGGAAAGTGGGTTTTTGGGACTGAAGACGGAGGTGGATGCGGCGGCGGCGGTGGAAGCCGACAGCCATAGCGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGTTATCGTTGGAGGAAATATGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGTGCACATATCAAGGTTGCAATGTGAAGAAACAAGTACAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAAATTTACAGTACTCCTTTCTGA 513 48.15 MENYQMFFPCSDGGGLSAYHHAADMSSSGGSDMMFASFHGGDLQESGFLGLKTEVDAAAAVEADSHSGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRCTYQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3097719 3100555 + Tan0016303.2 Tan07g0088 757619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0088 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 150 IPR044810 GO:0003700(InterPro)
Tan07g0088 170 SUPERFAMILY WRKY DNA-binding domain 86 149 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan07g0088 170 ProSiteProfiles WRKY domain profile. 89 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan07g0088 170 SMART WRKY_cls 94 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan07g0088 170 Gene3D WRKY domain 78 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan07g0088 170 MobiDBLite consensus disorder prediction 62 81 - -
Tan07g0088 170 FunFam WRKY transcription factor 57 80 150 - -
Tan07g0088 170 Pfam WRKY DNA -binding domain 95 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0088 Tan-Chr7:3097719 Tan10g1324 Tan-Chr10:15803838 1.40E-41 dispersed
Tan07g0087 Tan-Chr7:3097719 Tan07g0088 Tan-Chr7:3097719 8.80E-95 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27872 PF03106 WRKY 5.60E-19 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0088 - - - 0.0