Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0187 ATGATTGAGTTCTGTTTTCTTGATACAGATGGCAATTCAAGCTTAATTACATCCTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACGAAAGCTAGCCCCATTATACCCAACCATTCTAGATGTCAATCCATTGATATTGAGGAGAATGTGGATGGTGTTCGTTCTTCTTCCTTCGTGTCAGATTGCGCACAAACATTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCTTGGGTATCTGATGAAGCTTCATCCTCAGGCGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGAGGAATGTATGCAATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAAGCATCTAGATAAACAACGATTAGAGGAAGCTAGGAAGCTCGAAGAGATCAACAGTAAAGAGGTGGCTTCCAAAGAATTTGCTAGGGAAGAGAGAGCGAAGCTTGAAGCTTTGAGAAGAGAAGCAAAGTATGTAAAAGAACGCGCCGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTTTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCGTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTCTATAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGGTCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCACCATCCCCATCTACTACTACTCCTCGGAGCGTGTCCAGATAAGAATTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCGATACACCTGCAATCCCATGGTATGAGAGGTATAGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAGCCAGAACCAATAATCCACCGGGATCTTAAGCCAGCAAACATCTTACTTGACCAGAACCTCGTGAGCAAAATCGGCGATGTCAGTCTTTCTACCGTGTTTAGTTCAGACCCTTTAATGTCTACTGCATTCAAGGACAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCCGAGTATCAACGAACTGGATTAATCTCACCTAAGTCTGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTGGTGGAAACAGCCATTGATAACCACACTTTAATAAGGGTTCTTGATATAGAGGCTGGACATTGGCCCGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCCAACTTAAAGGATCATGTACTTCCCTTGTTACTGACACTGAAAAAGGTTGCTGACGAGGCTCGCAATTCGGCCTCCAGAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCGTCAGGACGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGAAGTGGCTTCAAGAGAACGACATCTCACCAATGACAAAGTTGCGACTGCCAGATAAGAATTTAATACCAAACTATAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTAA 1824 43.42 MIEFCFLDTDGNSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKASPIIPNHSRCQSIDIEENVDGVRSSSFVSDCAQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVNFELEKLRIELRHARGMYAIAQRETIDASRKLKHLDKQRLEEARKLEEINSKEVASKEFAREERAKLEALRREAKYVKERAEREGIYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDGHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGDTPAIPWYERYRIAWEIASALVFLHSSKPEPIIHRDLKPANILLDQNLVSKIGDVSLSTVFSSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLIRVLDIEAGHWPVEETYELARLGLRCAELQRKDRPNLKDHVLPLLLTLKKVADEARNSASRVPAAIPNHFICPIRQDVMNDPCVAADGYTYDRRAIEKWLQENDISPMTKLRLPDKNLIPNYSLLSAIVEWNSRKN 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4452608 4457167 + Tan0019991.1 Tan07g0187 757718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0187 607 Coils Coil 127 147 - -
Tan07g0187 607 SUPERFAMILY RING/U-box 525 605 - -
Tan07g0187 607 Coils Coil 183 207 - -
Tan07g0187 607 CDD RING-Ubox_WDSUB1-like 538 592 - -
Tan07g0187 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan07g0187 607 Gene3D Phosphorylase Kinase; domain 1 222 326 - -
Tan07g0187 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 607 IPR013083 -
Tan07g0187 607 SUPERFAMILY Protein kinase-like (PK-like) 235 510 IPR011009 -
Tan07g0187 607 SMART Ubox_2 540 602 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g0187 607 ProSiteProfiles Protein kinase domain profile. 254 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan07g0187 607 Pfam U-box domain 537 606 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g0187 607 Gene3D Transferase(Phosphotransferase) domain 1 327 535 - -
Tan07g0187 607 Pfam Protein tyrosine and serine/threonine kinase 259 510 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan07g0187 607 SMART serkin_6 254 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan07g0187 607 Coils Coil 155 175 - -
Tan07g0187 607 ProSiteProfiles U-box domain profile. 536 607 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g0187 607 ProSitePatterns Protein kinases ATP-binding region signature. 260 281 IPR017441 GO:0005524(InterPro)
Tan07g0187 607 PANTHER OS02G0152300 PROTEIN 72 599 IPR051348 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0187 Tan-Chr7:4452608 Tan08g0050 Tan-Chr8:535292 2.70E-90 dispersed
Tan07g0187 Tan-Chr7:4452608 Tan08g0049 Tan-Chr8:535292 1.50E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67831 PF07714 PK_Tyr_Ser-Thr 3.20E-39 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0187 - - - 0.0