Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0203 ATGGCTGAAAAGCTCCATTTTTGGATCCTTGTGATTTATTCATTGTCCATTTTATTATCAATGTCTCCATGTTTCTCAAGAAGTCCAAACGCCATAGATTTATGGTGCAGCCGAACCCCATATCCGGACGTGTGCAAACACTTGTTTAAAGACGCGAAATTGGACCCAACAAAGCCCTCCGAGTTAAAAAAAACAGCTCTCAAAATCGCCATGGAAAGAGCAGTGACAGCCGAAACACTCACGAAGCAGCTCGGCGAAAAATGCCGAAGCCAAAAAGAGAGAGCCGCATGGGCCGACTGCTTGGAGCTCTACCAAAACACAATCCTCCAACTCAACAGAACATTCTCCGACAAATACTGCTCCGATTTCGACATCCAAACGTGGCTCAGCTCCGCGTTGACCAATCTCGAGACATGTCGTGCCGGGTTCGTTGACATGAATGTCAAGGACTACGACGTCGTTTTCCCCTTCCTGGCGAGGAATAATAACGTGACGCAGTTGATTAGCAATAGTTTAGCGATGAATAACTGCTCGGAGACGGAGATGGGTGGTTATGATCATGGGGGGTTTCCGACGTGGGTTCGGGGTGGAGACCGGCGGCTGCTGCAGGCGGAGGGGGTGCCTAAGGCAGACTTGGTGGTGGCGCAGGATGGGTCGGGGAATTATAGGACGGTGCAGGCGGCGGTGGATGGGATTAAATTAGGAAGTGGGAGATTTGTAATACATGTGAAAAAAGGGGTTTATAAAGAGAATGTTGTGATTGGGAATAAGATGAAGAATTTGATGCTTGTTGGAGATGGATTGAAGTATACTATTATTACTGGGAGTAGAAGTGTTGGTGGTGGTTCCACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGGGAAGGTTTCATCGCCCGTGGCATCACATTTCGCAACACGGCCGGACCCGAAAACCACCAGGCAGTAGCCCTGCGGTCGGGCTCCGATCTCTCCGTCTTCTACCGCTGTGGCTTCGAGGGTTATCAAGACACTCTCTACGTCCACTCGCAAAGACAATTCTACAGAGAATGCTACATCTACGGCACGGTCGATTTCATCTTCGGCAATGCAGCCGTGGTTCTCCAAAACTGCATGATCTACGCAAGAAAACCTATCCCAGGCCAGCAATGCGTGGTGACAGCCCAAGGCCGGACCGACCCGAACCAGAACACGGGGATCTCGATCCACAACTCGAGAGTGATGGCCTCGGACGACCTCAAACCGGCGCTAAGCTCAGTGAGGACGTATTTGGGGAGACCATGGAAGGAGTACTCTCGCACAGTTTACTTGCAAAGCTTCATGGACAGCTTGGTGAACCCTGCAGGGTGGCTTGAATGGACTGGAAATTTTGCTCTCAACACATTGTATTATGGAGAGTACAAGAATTTTGGACCTGCTTCTTCTACTGCCAATAGAGTGAAATGGAAGGGTTATAGAGTGATCACAAGTGTCACAGAAGCTTCAAAGTTTACTGTTCAAAATTTTATTGCTGGCAAATCATGGCTGCCTCCAACTGGAGTTCCATTCACTGCTTCCCTTTGA 1566 49.11 MAEKLHFWILVIYSLSILLSMSPCFSRSPNAIDLWCSRTPYPDVCKHLFKDAKLDPTKPSELKKTALKIAMERAVTAETLTKQLGEKCRSQKERAAWADCLELYQNTILQLNRTFSDKYCSDFDIQTWLSSALTNLETCRAGFVDMNVKDYDVVFPFLARNNNVTQLISNSLAMNNCSETEMGGYDHGGFPTWVRGGDRRLLQAEGVPKADLVVAQDGSGNYRTVQAAVDGIKLGSGRFVIHVKKGVYKENVVIGNKMKNLMLVGDGLKYTIITGSRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMASDDLKPALSSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWTGNFALNTLYYGEYKNFGPASSTANRVKWKGYRVITSVTEASKFTVQNFIAGKSWLPPTGVPFTASL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4599782 4603275 - Tan0005553.1 Tan07g0203 757734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0203 521 PANTHER PECTINESTERASE 12 512 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan07g0203 521 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Tan07g0203 521 SUPERFAMILY Pectin lyase-like 207 519 IPR011050 -
Tan07g0203 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Tan07g0203 521 CDD PMEI-like_3 34 176 - -
Tan07g0203 521 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Tan07g0203 521 NCBIfam pectinesterase inhibitor domain 12 176 IPR006501 GO:0004857(InterPro)
Tan07g0203 521 Pfam Pectinesterase 211 506 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan07g0203 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 177 IPR035513 -
Tan07g0203 521 Gene3D - 207 521 IPR012334 -
Tan07g0203 521 FunFam Pectinesterase 206 521 - -
Tan07g0203 521 SMART PMEI_2 27 174 IPR006501 GO:0004857(InterPro)
Tan07g0203 521 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0385 Tan-Chr1:3234724 Tan07g0203 Tan-Chr7:4599782 5.90E-158 dispersed
Tan01g0386 Tan-Chr1:3242848 Tan07g0203 Tan-Chr7:4599782 4.80E-205 dispersed
Tan03g2336 Tan-Chr3:77352184 Tan07g0203 Tan-Chr7:4599782 4.70E-121 dispersed
Tan06g0778 Tan-Chr6:6097598 Tan07g0203 Tan-Chr7:4599782 2.00E-108 dispersed
Tan07g0203 Tan-Chr7:4599782 Tan10g0389 Tan-Chr10:3069015 6.40E-165 dispersed
Tan07g0203 Tan-Chr7:4599782 Tan06g0058 Tan-Chr6:751932 1.30E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0203 K01051 - csv:101216005 840.876