Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan07g0249 | ATGGTGAGAGGAAAAGTGGAAATGAAACGGATTGAAAATGCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTGTTGAAAAAGGCTTACGAGTTATCCGTTTTGTGCGATGCTGAAGTTTCTGTCATCATTTTCTCTCAAAAAGGAAGACTCTATGAGTTCTCAAGCTCCGACATGCAAAAGTCAATCGAACGCTACCGCAAGTATGGAAAAGATGGACAGACCAACACTTTTCGCTCGGAAGGATACATGCAGCAACTGAAGCAGGAAGCTGACATGACGGCAAAGAAAATCGAGCAACTTCAAAGTTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCCTTTGAGGAAATTCGAGAGATTGAAAGACAGTTGATACTGAGCTTAACCCGTATTAGAGAAAGAAAGTCTCAGCTATTCAAGGAACAGAAAAAGAAGCTGATTGAAAAGGGGAAACTCCTTATAGAAGAAAATATAAAGTTATCTGCAAAGTGTGGTACAAAGCCATGGCAACCAGCAGCTGCTGAAGATGAGGGAGGCATTATGAGTTTATGCAGCCAAAGTAGGCAAGGTTCTGATATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA | 636 | 41.82 | MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERKSQLFKEQKKKLIEKGKLLIEENIKLSAKCGTKPWQPAAAEDEGGIMSLCSQSRQGSDMQTELFIGLPCS | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5370438 | 5406404 | - | Tan0016035.1 | Tan07g0249 | 757780 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan07g0249 | 211 | SUPERFAMILY | SRF-like | 3 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 191 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan07g0249 | 211 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan07g0249 | 211 | Coils | Coil | 87 | 107 | - | - | |
Tan07g0249 | 211 | Pfam | K-box region | 87 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan07g0249 | 211 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Tan07g0249 | 211 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | Gene3D | - | 14 | 109 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Tan07g0249 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan07g0249 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0312 | Tan-Chr1:2653098 | Tan07g0249 | Tan-Chr7:5370438 | 1.40E-51 | dispersed | |
Tan01g0313 | Tan-Chr1:2653098 | Tan07g0249 | Tan-Chr7:5370438 | 1.00E-51 | dispersed | |
Tan07g0249 | Tan-Chr7:5370438 | Tan10g0311 | Tan-Chr10:2588016 | 6.20E-42 | dispersed | |
Tan07g0249 | Tan-Chr7:5370438 | Tan07g0250 | Tan-Chr7:5409800 | 1.00E-36 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27885 | PF01486 | K-box | 2.70E-19 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan07g0249 | - | - | - | 0.0 |