Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0249 ATGGTGAGAGGAAAAGTGGAAATGAAACGGATTGAAAATGCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTGTTGAAAAAGGCTTACGAGTTATCCGTTTTGTGCGATGCTGAAGTTTCTGTCATCATTTTCTCTCAAAAAGGAAGACTCTATGAGTTCTCAAGCTCCGACATGCAAAAGTCAATCGAACGCTACCGCAAGTATGGAAAAGATGGACAGACCAACACTTTTCGCTCGGAAGGATACATGCAGCAACTGAAGCAGGAAGCTGACATGACGGCAAAGAAAATCGAGCAACTTCAAAGTTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCCTTTGAGGAAATTCGAGAGATTGAAAGACAGTTGATACTGAGCTTAACCCGTATTAGAGAAAGAAAGTCTCAGCTATTCAAGGAACAGAAAAAGAAGCTGATTGAAAAGGGGAAACTCCTTATAGAAGAAAATATAAAGTTATCTGCAAAGTGTGGTACAAAGCCATGGCAACCAGCAGCTGCTGAAGATGAGGGAGGCATTATGAGTTTATGCAGCCAAAGTAGGCAAGGTTCTGATATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 636 41.82 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERKSQLFKEQKKKLIEKGKLLIEENIKLSAKCGTKPWQPAAAEDEGGIMSLCSQSRQGSDMQTELFIGLPCS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5370438 5406404 - Tan0016035.1 Tan07g0249 757780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0249 211 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan07g0249 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan07g0249 211 Coils Coil 87 107 - -
Tan07g0249 211 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan07g0249 211 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan07g0249 211 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 Gene3D - 14 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan07g0249 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g0249 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0312 Tan-Chr1:2653098 Tan07g0249 Tan-Chr7:5370438 1.40E-51 dispersed
Tan01g0313 Tan-Chr1:2653098 Tan07g0249 Tan-Chr7:5370438 1.00E-51 dispersed
Tan07g0249 Tan-Chr7:5370438 Tan10g0311 Tan-Chr10:2588016 6.20E-42 dispersed
Tan07g0249 Tan-Chr7:5370438 Tan07g0250 Tan-Chr7:5409800 1.00E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27885 PF01486 K-box 2.70E-19 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0249 - - - 0.0