Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0256 ATGTCTTCCACTCCCCTTCTCTCTCTCCCTTTCACTCTCAAGCCCTCTCACTTCCCCAATTCCTCCCTCTCGCCGCTCCGCCGATCATCTTCCTTCGCGCCATTTCGGACAGTAGCAGTTCACAGGGGTTTTAAGAGTACCAGTTCTACTTTCGCCTATGTCACCGGCCCTGCGTCCGACCCTAATGTCAGCGAGTCCGACCCTAAGCTCGACGACGACTCTGATTCCCAGGTTCCGGTTCTTGGCGTCTTGAATTCGGGGCTCATCTGGAGGCTTTTAACGAAGCACAAGCTGCGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGGTCTTTATGGAGGCTGCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTGACGGTTTTGTTTGTCACAAACATGAACTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGACTTGGGCTCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATGTATACTATTTACATTGTCCCCTCAGCTTGCACCCGTTCTTGGTCTGCTGATGCTTTCTGTATCTTTCTCCGTTGCTGTATACAAGCGTTCAACTATTCCTGTATTTAAAGCTCATGGATTAGCTCAAGCATCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCACTTTTGGTCGCCAAGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTTTAAATCTCTGAATGAATCTTTAACCAGAGTTGCTGTTTACATTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTAAATACATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATACGGGTTAGAAAAAGAGATGCAGCAGAAAGAGTTTAGATATAAGTTGTTATTCTCCGGCGATACTGATGAAAATAGTCGAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGCGCTTTTCTTATCCTTTGAGACCTGACGTTGACATTCTTAGTGGTTTGAATTTAACCCTTAAATGTGGAACCGTAACGGCATTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAACGCAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGATAAAAGGGAATGGGCTCGGGCCGTTTCAATAGTGAATCAAGAACCCGTCCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAAAGCTGCAAACGCTCACGACTTCATTATTTCACTTCCTCAGGGCTATGACACGCCAGTCGGTGAACGTGGAGGCCTTCTAAGCGGTGGCCAGCGACAGAGAATTGCAATTGCAAGAGCTTTGCTTAAGAATGCACCAATCCTAATACTTGATGAGGCGACCAGTGCACTGGATGCGGTTAGTGAGCGACTGGTCCAGGATGCTCTGAACCATCTAATGAAGGGCAGGACAACATTGGTGATCGCACATCGGTTGAGTACGGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAGAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCAAAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2103 44.22 MSSTPLLSLPFTLKPSHFPNSSLSPLRRSSSFAPFRTVAVHRGFKSTSSTFAYVTGPASDPNVSESDPKLDDDSDSQVPVLGVLNSGLIWRLLTKHKLRLLVSSLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFTLSPQLAPVLGLLMLSVSFSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFTFGRQVIAYEGSGISLGTFKSLNESLTRVAVYISLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSGDTDENSRVKTQYMAALKSSSNVINLAWSGDICLEDVRFSYPLRPDVDILSGLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPTQGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGRIVELGTHLELLAQKGQYASLVGTQRLAFE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5530315 5537742 + Tan0006684.1 Tan07g0256 757787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0256 700 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 86 695 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Tan07g0256 700 Gene3D ABC transporter type 1, transmembrane domain 87 402 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Tan07g0256 700 Pfam ABC transporter transmembrane region 101 371 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Tan07g0256 700 Gene3D - 454 697 IPR027417 -
Tan07g0256 700 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 454 698 - -
Tan07g0256 700 CDD ABC_6TM_TAP_ABCB8_10_like 105 392 - -
Tan07g0256 700 Pfam ABC transporter 474 625 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan07g0256 700 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 101 384 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Tan07g0256 700 ProSitePatterns ABC transporters family signature. 597 611 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan07g0256 700 SMART AAA_5 483 677 IPR003593 GO:0016887(InterPro)
Tan07g0256 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 694 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan07g0256 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 695 IPR027417 -
Tan07g0256 700 CDD ABC_MTABC3_MDL1_MDL2 456 695 - -
Tan07g0256 700 SUPERFAMILY ABC transporter transmembrane region 89 401 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Tan07g0256 700 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0256 Tan-Chr7:5530315 Tan11g0522 Tan-Chr11:4464064 6.50E-72 dispersed
Tan07g0256 Tan-Chr7:5530315 Tan08g1860 Tan-Chr8:70858074 6.50E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0256 K05657 - csv:101211598 1211.05