Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0461 ATGATATCAATTTCTCCAGTAGTGATTCTGATAATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTACTGAAGTTTGTTGTTTTCTTCCAATACGTGCCGCGGTTTATCAGAATCTATCCTTTATATAAAGAAGTTATAAGAACATCTGTACTCACAGAAACCGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTTTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGGGAAACTACATGCTGGCAGAGGGCTTGTCATGAACATAATCAAACCGACTGTGCGAAGTCACTATATTGTGATGTTTATGTCAATCAACGAAATAACTCATTTTTAAACGTTTCATGTCCTCTTGTGGATGGAGACAAAGACAAACCACCTTTTGATTTTGGAATATTTCTTGATGCTCTTAATTCTGGTGTTGTGGAGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTGCTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGAGAGCGAATCAGGAGGTATGAACAGTACAAGTGGCAGGAAACGAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTGCTAATGAGGGTACCGATGTTTGAAAAAATGGACGAACAATTGTTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTACATCGTTAGGGAAGGAGACCCGGTGGACGAGATGGTCTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCTAATCTACCAATTTCGACGAGAACCGTTCGAACTCTTTCGGAAGTTGAAGCATTTGCTTTAAAGGCAGATGACTTGAAGTTTGTAGCCTCACAGTTCCGACGGCTTCATAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGGACATGGGCAGCATGCTTTATACAAGCAGCATGGCGTCGATATAGAAGAAAGAAGCACGAACAGGCTCTCTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCTACCATCTATGCATCCAGATTTGCAGCTAACATCCTTCGAACAATTCGACGCACAAGCTCACGTAAGGCCAGGATTCCGGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAGAGAATAGTTGA 1575 42.92 MISISPVVILIIIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVIRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACHEHNQTDCAKSLYCDVYVNQRNNSFLNVSCPLVDGDKDKPPFDFGIFLDALNSGVVESMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMVFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8450611 8458086 + Tan0011420.2 Tan07g0461 757992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0461 524 CDD CAP_ED 294 425 IPR000595 -
Tan07g0461 524 Gene3D Jelly Rolls 292 412 IPR014710 -
Tan07g0461 524 FunFam Cyclic nucleotide-gated ion channel 1 292 410 - -
Tan07g0461 524 SUPERFAMILY cAMP-binding domain-like 223 416 IPR018490 -
Tan07g0461 524 Pfam Ion transport protein 3 221 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan07g0461 524 SMART cnmp_10 294 425 IPR000595 -
Tan07g0461 524 FunFam Cyclic nucleotide-gated ion channel 1 221 285 - -
Tan07g0461 524 Coils Coil 446 466 - -
Tan07g0461 524 Gene3D - 1 218 - -
Tan07g0461 524 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 512 - -
Tan07g0461 524 Gene3D Helix hairpin bin 220 285 - -
Tan07g0461 524 Pfam Cyclic nucleotide-binding domain 315 406 IPR000595 -
Tan07g0461 524 ProSiteProfiles cAMP/cGMP binding motif profile. 294 378 IPR000595 -
Tan07g0461 524 SUPERFAMILY Voltage-gated potassium channels 36 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0461 Tan-Chr7:8450611 Tan08g0725 Tan-Chr8:7495317 5.60E-161 dispersed
Tan07g0460 Tan-Chr7:8450611 Tan07g0461 Tan-Chr7:8450611 3.20E-292 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0461 K05391 - csv:101221781 988.408